DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ser and crb

DIOPT Version :10

Sequence 1:NP_524527.3 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_001247284.1 Gene:crb / 42896 FlyBaseID:FBgn0259685 Length:2253 Species:Drosophila melanogaster


Alignment Length:1279 Identity:307/1279 - (24%)
Similarity:449/1279 - (35%) Gaps:414/1279 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RRKPATSSSLESTIESADSLGMSKKTATKRQRPRHRVPKIATLPSTIRDCRSLKSACNLIA---- 70
            :|:..|:::..:|:.:      |.:|||...|.|.|....|.:.|.:     ||.|.::.:    
  Fly    15 QRQAETATTTTTTVAA------SVETATTTARSRDRTKSAAQITSHL-----LKRAISVYSSPQW 68

  Fly    71 ---LILILLVHKISAAGNFELEILEISNTNSHLLNGYCCGMPAELRATKTIGCSPCTTAFRLCLK 132
               .|||.|...:::..         ..|.....||                    :|..||   
  Fly    69 IPLFILIYLATDVASVA---------VPTKEAYFNG--------------------STYLRL--- 101

  Fly   133 EYQTT-----EQGASISTGCSFGNATTKILGGSSFVLS-----------DPGVGA------IVLP 175
               ||     :..|.....|..|....:....:|.|:|           .|.|..      :.||
  Fly   102 ---TTPMPIWDHSAISFRSCRGGEILAQQYNKNSIVISVLNDFLQISLAGPAVHGPNNRLDVKLP 163

  Fly   176 FTF---RW-TKSF---------------------TLILQALDMYNTSYPDAERLIEETSYSGVIL 215
            :..   || |..|                     |...|.|...:..|.|| .||...|:||.:|
  Fly   164 YQLLDNRWHTLQFKYEYGNLYLHVDRAASIFANSTYNSQFLTNQDIGYKDA-ILILGNSFSGCLL 227

  Fly   216 PSPEWKTLDHIGRNARITYRVRVQCAVT--------YYNTTCTTFCRPRDDQFGHYACGS--EGQ 270
            ..|..:.::    |:.:...|...|.:|        .:......||. .|...||..|.|  ||.
  Fly   228 DGPGLQFVN----NSTVQNVVFGHCPLTPGPCSDHDLFTRLPDNFCL-NDPCMGHGTCSSSPEGY 287

  Fly   271 KL-CLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGWRGPLCNECMVYPGCKH-GSC---N 330
            :. |...:.|.||::              |....|...|               |:: |||   :
  Fly   288 ECRCTARYSGKNCQK--------------DNGSPCAKNP---------------CENGGSCLENS 323

  Fly   331 GSAWKCVCDTNWGGILCDQDLN---FCGTHEPCKHGGTCENT-APDKYRCTCAEGLSGEQCEIVE 391
            ...::|.||.|..|..|:.::|   .|.|: ||.:.|.|... ......|.|.:|.:|.:||:..
  Fly   324 RGDYQCFCDPNHSGQHCETEVNIHPLCQTN-PCLNNGACVVIGGSGALTCECPKGYAGARCEVDT 387

  Fly   392 HPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSP 456
            ..||::||:|.|:|                                  :|.       :||    
  Fly   388 DECASQPCQNNGSC----------------------------------IDR-------ING---- 407

  Fly   457 GLVSLGSLQLQQQLAPDFTCDCA-AGWTGPTCEINIDECAGGPCEHGGTCIDLIG---------- 510
                             |:|||: .|:||..|:.|:|||...||.:||.|.|..|          
  Fly   408 -----------------FSCDCSGTGYTGAFCQTNVDECDKNPCLNGGRCFDTYGWYTCQCLDGW 455

  Fly   511 ---------------------------GFRCECPPEWHGDVCQVDV---------NECEA----- 534
                                       ||:|.||||:.|::||:..         :||..     
  Fly   456 GGEICDRPMTCQTQQCLNGGTCLDKPIGFQCLCPPEYTGELCQIAPSCAQQCPIDSECVGGKCVC 520

  Fly   535 -PHSAGIAANALLTTTA-----------------TAIIGSNLSSTALLAALTSA----------- 570
             |.|:|...:.|.|||.                 ...|.:.|::|..:..:|::           
  Fly   521 KPGSSGPIGHCLPTTTTPTPEQEPTTTPRTTPNPNPAIPNTLTTTTKIPPITTSRTLVGTTTGSR 585

  Fly   571 -----------VASTSLAIGP---CINAKECRNQPGSFACICKEGWGGVTCAENLDDCV------ 615
                       ..|.||...|   |:|...|....|:::|||..|:.|..|..:..|..      
  Fly   586 RPPQQPLQSPTQRSASLNACPQENCLNGGTCLGYSGNYSCICASGYTGYNCQTSTGDGASALALT 650

  Fly   616 --------GQCRNGATCIDLVNDYRCACASGFKGRDCETD------------------------- 647
                    |:|.||.||  .:|...|.||.|:.|..||..                         
  Fly   651 PINCNATNGKCLNGGTC--SMNGTHCYCAVGYSGDRCEKAENCSPLNCQEPMVCVQNQCLCPENK 713

  Fly   648 -IDECATSPCRNGGECVDMV-GKFNCICPLGYSGSLCEEAKENCT--PSPCLEGHCLNTPEGYYC 708
             .::|||.||:|||||||:. |.:.|.|..|::|..|....:.||  |..|..|.|.|....|.|
  Fly   714 VCNQCATQPCQNGGECVDLPNGDYECKCTRGWTGRTCGNDVDECTLHPKICGNGICKNEKGSYKC 778

  Fly   709 HCPPDRAGKHCEQLRPLCSQPPCNEGCFANVSLATSATTTTTTTTTATTTRKMAKPSGLPCSGHG 773
            :|.|...|.||:.....|...||..|...:..:...................:.:....|||...
  Fly   779 YCTPGFTGVHCDSDVDECLSFPCLNGATCHNKINAYECVCQPGYEGENCEVDIDECGSNPCSNGS 843

  Fly   774 SCEMSDVGTF-CKCHVGHTGTFCEHNLNECSPNPCRNGGICLDGDGDFTCECM-SGWTGKRCSER 836
            :| :..:..| |.|..|.||..|:.::::|..:||.|||.|:|..|.|.|:|. :|:.|:.|...
  Fly   844 TC-IDRINNFTCNCIPGMTGRICDIDIDDCVGDPCLNGGQCIDQLGGFRCDCSGTGYEGENCELN 907

  Fly   837 ATGCYAGQCQNGGTCMPGAPDKALQPHCRCAPGWTGLFCAEAIDQCRGQPCHNGGTC-------- 893
            ...|.:..|.||..|:    |:.....|.|..|:.|..|.:.|::|...||...|.|        
  Fly   908 IDECLSNPCTNGAKCL----DRVKDYFCDCHNGYKGKNCEQDINECESNPCQYNGNCLERSNITL 968

  Fly   894 -------------------ESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGGYS 939
                               |:.:| :.|||..|..|.:|.||:|||...||.....|.||||.|:
  Fly   969 YQMSRITDLPKVFSQPFSFENASG-YECVCVPGIIGKNCEININECDSNPCSKHGNCNDGIGTYT 1032

  Fly   940 CICPPGRHGLRCEILLS--DPKSACQNAS--NTISPYTA---LNRSQNWLDIALTGRTEDDENCN 997
            |.|.||..|..|||.:.  |..:.||..:  :.|..|..   .|.......:.|.|       |:
  Fly  1033 CECEPGFEGTHCEINIDECDRYNPCQRGTCYDQIDDYDCDCDANYGGKNCSVLLKG-------CD 1090

  Fly   998 ACVCENG-------TSRCTNLW-CGLPNCYKVDPLSKSSNLSGV 1033
            ...|.||       .:..|:|: |...|.::.|...|::.||.|
  Fly  1091 QNPCLNGGACLPYLINEVTHLYNCTCENGFQGDKCEKTTTLSMV 1134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_524527.3 MNNL 83..238 CDD:462222 37/201 (18%)
DSL 220..282 CDD:128366 15/72 (21%)
EGF_CA 350..388 CDD:238011 11/41 (27%)
EGF_CA 490..526 CDD:238011 19/72 (26%)
EGF_CA 610..645 CDD:238011 13/48 (27%)
EGF_CA 647..683 CDD:238011 17/62 (27%)
EGF_CA 690..720 CDD:238011 12/31 (39%)
EGF_CA 798..833 CDD:238011 14/35 (40%)
EGF_CA 879..913 CDD:238011 13/60 (22%)
EGF_CA 916..952 CDD:238011 17/35 (49%)
VWC_out <993..1053 CDD:214565 13/49 (27%)
crbNP_001247284.1 LamG 91..228 CDD:238058 32/163 (20%)
EGF 269..299 CDD:394967 10/30 (33%)
EGF_CA <311..341 CDD:238011 10/44 (23%)
EGF_CA 386..423 CDD:238011 17/98 (17%)
EGF_CA 425..460 CDD:238011 11/34 (32%)
EGF 466..495 CDD:394967 7/28 (25%)
EGF 605..633 CDD:394967 9/27 (33%)
EGF_CA 716..750 CDD:238011 17/33 (52%)
EGF_CA 753..789 CDD:238011 12/35 (34%)
EGF_CA 792..828 CDD:238011 4/35 (11%)
EGF_CA 830..865 CDD:238011 10/35 (29%)
EGF_CA 868..905 CDD:238011 14/36 (39%)
EGF_CA 907..943 CDD:238011 10/39 (26%)
EGF_CA 1009..1045 CDD:238011 17/35 (49%)
EGF_CA 1047..1082 CDD:238011 6/34 (18%)
Laminin_G_1 1155..1290 CDD:395008
EGF 1316..1346 CDD:394967
Laminin_G_1 1388..1550 CDD:395008
EGF_CA <1593..1622 CDD:238011
Laminin_G_2 1692..1828 CDD:460494
EGF_CA 1901..1937 CDD:238011
EGF_CA 1939..1974 CDD:238011
EGF_CA 2057..2094 CDD:238011
EGF_CA 2096..2133 CDD:238011
EGF_CA 2137..2175 CDD:238011
Blue background indicates that the domain is not in the aligned region.

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