DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Dlk2

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_017451911.1 Gene:Dlk2 / 316232 RGDID:1309143 Length:405 Species:Rattus norvegicus


Alignment Length:519 Identity:126/519 - (24%)
Similarity:171/519 - (32%) Gaps:212/519 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   272 LCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGWRGPLCNECMVYPGCKHGSCNGSAWKC 336
            ||:.|..........|.:.||..||.|...|.|.|.|||.|..|..|:..|||:||:|: ..|:|
  Rat    37 LCILGATSQPARADDCSSHCDLAHGCCAPDGSCRCDPGWEGLHCERCVRMPGCQHGTCH-QPWQC 100

  Fly   337 VCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPC--ATRPC 399
            :|.:.|.|..||:|.:.|.:..||::||.|......:|.|.|..|..|..||....||  |..||
  Rat   101 ICHSGWAGKFCDKDEHICTSQSPCQNGGQCVYDGGGEYHCVCLPGFRGRGCERKAGPCEQAGFPC 165

  Fly   400 RNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLVSLGSL 464
            :|||.|                  :.|                   :|.|||             
  Rat   166 QNGGQC------------------QDN-------------------QGFALN------------- 180

  Fly   465 QLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTCIDLIGGFRCECPPEWHGDVCQVDV 529
                     |||.|.||:.|..||:|:|:|...|                               
  Rat   181 ---------FTCRCLAGFMGAHCEVNVDDCLMRP------------------------------- 205

  Fly   530 NECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQPGSF 594
                                                                             
  Rat   206 ----------------------------------------------------------------- 205

  Fly   595 ACICKEGWGGVTCAENLDDCVGQCRNGATCIDLVNDYRCACASGFKGRDCETDIDECATSPCRNG 659
                                   |.|||||||.:|.:.|.|..||.||.|..::|:||:.||:.|
  Rat   206 -----------------------CANGATCIDGINRFSCLCPEGFAGRFCTINLDDCASRPCQRG 247

  Fly   660 GECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCLEGHCLNTPEGYYCHCP------------P 712
            ..|.|.|..|:|:||.||.|..||..    .|:|  :...:.||:     .|            |
  Rat   248 ARCRDRVHDFDCLCPSGYGGKTCELV----LPAP--DPATIGTPQ-----APASAVVVPATGSAP 301

  Fly   713 DRAGKHCEQL--RPLCSQPPCNEGCFANVSLA-----TSATTTTTTTTTATTTRKMAKPSGLPC 769
            ..||....::  :.:..:.....|..:.|:|.     |:|....|...|....|:...|:| ||
  Rat   302 HSAGAGLLRISVKEVVRRQEAGLGESSLVALVVFGSLTAALVLATVLLTLRAWRRGICPTG-PC 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 3/9 (33%)
EGF_CA 350..388 CDD:238011 12/37 (32%)
EGF_CA 490..526 CDD:238011 4/35 (11%)
EGF_CA 610..645 CDD:238011 15/34 (44%)
EGF_CA 647..683 CDD:238011 16/35 (46%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
Dlk2XP_017451911.1 EGF_CA 112..152 CDD:238011 13/39 (33%)
EGF_CA <164..195 CDD:238011 18/89 (20%)
EGF_CA 197..233 CDD:238011 19/154 (12%)
EGF_CA 235..271 CDD:238011 16/35 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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