DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ser and Crb1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_001100652.1 Gene:Crb1 / 304825 RGDID:1309947 Length:1407 Species:Rattus norvegicus


Alignment Length:1502 Identity:288/1502 - (19%)
Similarity:394/1502 - (26%) Gaps:792/1502 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 NTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGV--NCEEAICKAGC--DPVHGKC---DRPGE 303
            |:||..|  |:|.     :|       ||:....:  :||:  .|..|  .|..|..   :.|||
  Rat    44 NSTCKRF--PQDS-----SC-------CLDTANDLDTDCED--LKDPCLSSPCQGTATCVNIPGE 92

  Fly   304 ----CECRPGWRGPLC----NECMVYPG---CKHGSCNGSAWK------CVCDTNWGGILCDQDL 351
                |:|.||:.|..|    |.|    |   |:||   |:..|      |:|...:.|..|:.|.
  Rat    93 RSFLCQCPPGYSGLTCDTATNSC----GGNLCQHG---GTCHKDPEHPVCICPPGYAGRFCETDH 150

  Fly   352 NFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQ 416
            |.|.: .||.:|..|::.. :.|.|.|..|..|..|::....|.:.||.|...|.          
  Rat   151 NECDS-SPCHNGAVCQDRI-NGYSCFCVPGYQGRHCDLEVDECVSDPCMNEAVCL---------- 203

  Fly   417 VYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAG 481
                    :.:||                                            :||.|...
  Rat   204 --------NEIGR--------------------------------------------YTCVCPQE 216

  Fly   482 WTGPTCEINIDECAGGPCEHGGTCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALL 546
            ::|..||:.||||...||.||.||.|.:||:.|:|.|.:.||.|:::.||||:.           
  Rat   217 YSGVNCELEIDECGSQPCLHGATCRDALGGYFCDCAPGFLGDHCELNFNECESQ----------- 270

  Fly   547 TTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQPGSFACICK-EGWGGVTCAEN 610
                                             ||::...|.:...|:.|.|. .|:.|:.|...
  Rat   271 ---------------------------------PCLHGGLCVDGRNSYHCDCTGSGFRGIHCESL 302

  Fly   611 LDDCVGQ-CRNGATCIDLVNDYRCACASGFKGRDCETDIDECATSPCRNGGECV-----DMVGK- 668
            :..|..: |.|.|||.|.|:.|.|.|..|:.|..|||||:||:::||:.||||.     |:.|. 
  Rat   303 IPLCWSKPCHNDATCEDTVDSYICHCWPGYTGALCETDINECSSNPCQFGGECAELSSQDLYGNT 367

  Fly   669 --------------FNCICPLGYSGSLCEEAKENCTPSPCLE-GHCLNTPEGYYCHCPPD----- 713
                          :.|||..|::|..|||..:.|.|:|||. |.|.|.|..|.||||.|     
  Rat   368 AGLPSSFSYLGASGYVCICLPGFTGRHCEEDIDECLPNPCLNGGTCQNLPGNYTCHCPFDDTSRT 432

  Fly   714 -RAGKHCEQL-----------------------------------RPLCSQ-------------- 728
             ..|:.|.::                                   .|||..              
  Rat   433 FYGGEDCSEILLGCTHHQCLNNGKCIPHFQNGQHEFTCQCPSGYAGPLCETVTTLSFESNGFLWV 497

  Fly   729 ---------PPCN-----------------------------EGC-------------------- 735
                     ..||                             :||                    
  Rat   498 TSGSHTSMGSECNISLKFQTVQPNALLLVRGNKDMSVKLELLDGCVHLSIEVWNQSKVLLYISHN 562

  Fly   736 ------------FA-NVSLATSATTTTTTTTT-------------------------ATTTRKMA 762
                        || .::||.:.::.....||                         .|.:..|:
  Rat   563 TSDGEWHLVEVTFAETITLALNGSSCKEKCTTKSSVSIENHQSICALQNSFLGGLPMGTASDSMS 627

  Fly   763 K-------------------------------PSGL-----------------PCSGHGSCEMSD 779
            .                               .|||                 ||...|.|....
  Rat   628 VLNIYNVPSTPSFVGCLQDIRFDLNHITLESISSGLSSNVKAGCLRKDWCESQPCQNRGRCINLW 692

  Fly   780 VGTFCKCHVGHTGTFC------------------------------------------------- 795
            .|..|:|...:.|:.|                                                 
  Rat   693 QGYRCECDRPYAGSNCLKEYVAGRFGQDDSTGYAAFKVNDNFGQNFNLSMFVRTRQPLGFLLTLG 757

  Fly   796 -----------EH---------------------------------------------------- 797
                       ||                                                    
  Rat   758 NSTYQYVCVWLEHGSLALKTPGSPKLVANFFLSDGNAHLISLRIKPNEIELYQSSQNLGFMSVPA 822

  Fly   798 ---------------------------------------NL------------------------ 799
                                                   ||                        
  Rat   823 WTIQRGDVIFIGGLPDREKTEAYGGFLKGCIQDVRLNSQNLEFFPNSTNSAQHDPVLVNVTQGCP 887

  Fly   800 --NECSPNPCRNGGICLDGDGDFTCECMSGWTGKRCSE----RATGC-YAGQCQ---NGGTCMPG 854
              |.|..|||.|||:|.....||:|.|.:..:|:.|.|    :.:.| ...:||   .|..|:..
  Rat   888 GDNVCKSNPCHNGGVCHSLWDDFSCSCPTNTSGRACDEVQWCQLSPCPPIAECQLVPQGFECIAN 952

  Fly   855 APDKALQP-------------------------------HCRCAP-------------------- 868
            |....|..                               |....|                    
  Rat   953 AAFSGLSSEILFRSNGNITRELTNITFGFRTQDTNAVILHAEKEPEFLNISIQDSRLLFQLRSGN 1017

  Fly   869 ----------------GW-------------TGLFCAEAIDQ----------------------- 881
                            .|             |.|:..|..||                       
  Rat  1018 SFYTLHLTGSQLVNDGAWHRVTFSMIDPRAQTSLWQMEVDDQTPFVISAVATGNLNFLKDNTDIY 1082

  Fly   882 -------------------------------------------------------------CRGQ 885
                                                                         |...
  Rat  1083 VGDQAVDNQKGLQGCLSTVQIGGLYLSYFESLHGFTSKPQEEQFLKVSTNVALTGCLPLSACHSS 1147

  Fly   886 PCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGGYSCICPPGRHGLR 950
            ||.:||.||.....:||.|..|:||..|.|||:|||..||..| .|.||:..|.|.|.||..|..
  Rat  1148 PCLHGGICEDSYSSYRCACLPGWSGAHCEINVDECSSSPCVHG-NCSDGVAAYHCRCEPGYTGGN 1211

  Fly   951 CEILLSDPKS-ACQNASNTISPYTALNRSQNWLDIAL---TGRTEDDENCNACVCENGTSRCTNL 1011
            ||..:...|| .|.|.:      |.::.:|.:..:.|   |||........:.||.|..:..|  
  Rat  1212 CEAEVDTCKSHQCANGA------TCVSGAQGYSCLCLGNFTGRFCRHSRLPSTVCGNEKTNFT-- 1268

  Fly  1012 WCGLPNCYKVDPLSKSSNLSGVCKQHE-----VCVPALS--------ETCLSSPCNVRGDCRALE 1063
                  ||.          .|.|...:     ||.|..:        ..|.|.||...|.||   
  Rat  1269 ------CYN----------GGSCSVFQEDWKCVCRPGFTGEWCEENINECASDPCINGGLCR--- 1314

  Fly  1064 PSRRVAPPRLPAKSSCWPNQAVVNENCA------RLTILLALERVGKGASVEGLCSLVRVLLAAQ 1122
                    .|..:..|..:.|...|.|.      ||..::.  .||.|..|     |:.:||.|.
  Rat  1315 --------DLVNRFQCICDVAFAGERCELDLADDRLVGIIT--AVGSGTLV-----LLFILLLAA 1364

  Fly  1123 LIKKPAS 1129
            ::...||
  Rat  1365 IVSLIAS 1371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 9/37 (24%)
EGF_CA 350..388 CDD:238011 12/37 (32%)
EGF_CA 490..526 CDD:238011 18/35 (51%)
EGF_CA 610..645 CDD:238011 13/35 (37%)
EGF_CA 647..683 CDD:238011 17/55 (31%)
EGF_CA 798..833 CDD:238011 16/60 (27%)
EGF_CA 879..913 CDD:238011 15/117 (13%)
EGF_CA 916..952 CDD:238011 17/35 (49%)
VWC_out <993..1053 CDD:214565 13/72 (18%)
Crb1NP_001100652.1 EGF_CA 73..108 CDD:238011 11/34 (32%)
EGF 115..145 CDD:278437 10/36 (28%)
EGF_CA 149..184 CDD:238011 12/36 (33%)
EGF_CA 188..223 CDD:238011 11/96 (11%)
EGF_CA 226..261 CDD:238011 18/34 (53%)
EGF_CA 263..300 CDD:238011 12/80 (15%)
EGF_CA <310..338 CDD:238011 12/27 (44%)
EGF_CA 340..396 CDD:238011 17/55 (31%)
EGF_CA 398..>425 CDD:214542 12/26 (46%)
Laminin_G_2 515..650 CDD:280389 10/134 (7%)
EGF_CA 677..708 CDD:238011 8/30 (27%)
Laminin_G_2 744..861 CDD:280389 2/116 (2%)
EGF 892..921 CDD:278437 12/28 (43%)
LamG 955..1103 CDD:238058 9/147 (6%)
EGF_CA <1147..1176 CDD:238011 12/28 (43%)
EGF_CA 1178..1213 CDD:238011 17/35 (49%)
EGF_CA 1298..1334 CDD:238011 11/46 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFT
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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