DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Jag2

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_038967750.1 Gene:Jag2 / 29147 RGDID:2938 Length:1247 Species:Rattus norvegicus


Alignment Length:1380 Identity:489/1380 - (35%)
Similarity:638/1380 - (46%) Gaps:337/1380 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 IALILILLVHKISAAGNFELEILEISNTNSHLLNGYCCGMPAELRATKTIGC--SPCTTAFRLCL 131
            :.|:|:|.|......|.|||::..:.|.|..||:|.||  ..:.|.|:..||  ..|.|..|:||
  Rat    13 LLLLLVLCVQATRPMGYFELQLSALRNVNGELLSGACC--DGDGRTTRAGGCGRDECDTYVRVCL 75

  Fly   132 KEYQTTEQGASIS-TG-CSFGNATTKILGGSSFVL-------------------SDPGVGAIVLP 175
            ||||     |.:: || ||:|...|.:|||:||.|                   .|||:  :|:|
  Rat    76 KEYQ-----AKVTPTGPCSYGYGATPVLGGNSFYLPPAGAAGDRARARSRTGGHQDPGL--VVIP 133

  Fly   176 FTFRWTKSFTLILQALDMYNTSYPDAERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQC 240
            |.|.|.:|||||::|.|..|.:.||.|.|||..|::|:|.|...||:|...|..|.:..::||:|
  Rat   134 FQFAWPRSFTLIVEAWDWDNDTTPDEELLIERVSHAGMINPEDRWKSLHFSGHVAHLELQIRVRC 198

  Fly   241 AVTYYNTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECE 305
            ...||:.||..|||||:|.||||.|...|.|.|::||.|..|:||:||.||:.:||.|..||||.
  Rat   199 DENYYSATCNKFCRPRNDFFGHYTCDQYGNKACMDGWMGKECKEAVCKQGCNLLHGGCTVPGECR 263

  Fly   306 CRPGWRGPLCNECMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTA 370
            |..||:|..|:||:.||||.|||| ...|.|.|:|||||:|||:|||:||:|.||.:||||.|..
  Rat   264 CSYGWQGKFCDECVPYPGCVHGSC-VEPWHCDCETNWGGLLCDKDLNYCGSHHPCVNGGTCINAE 327

  Fly   371 PDKYRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSS 435
            ||:|.|.|.:|..|:.||..||.||:.||.|||:|                              
  Rat   328 PDQYLCACPDGYLGKNCERAEHACASNPCANGGSC------------------------------ 362

  Fly   436 SMRSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCE 500
                  |     :.|:|                     |.|.|.:||:||||.::|||||..||.
  Rat   363 ------H-----EVLSG---------------------FECHCPSGWSGPTCALDIDECASNPCA 395

  Fly   501 HGGTCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLA 565
            .||||:|.:.||.|.||.:|.|..||:|.||||..                              
  Rat   396 AGGTCVDQVDGFECICPEQWVGATCQLDANECEGK------------------------------ 430

  Fly   566 ALTSAVASTSLAIGPCINAKECRNQPGSFACICKEGWGGVTCAENLDDCVGQCRNGATCIDLVND 630
                          ||:||..|:|..|.:.|.|..||.|..|..|::||.|||::|.||.||||.
  Rat   431 --------------PCLNAFSCKNLIGGYYCDCLPGWKGANCHININDCHGQCQHGGTCKDLVNG 481

  Fly   631 YRCACASGFKGRDCETDIDECATSPCRNGGECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCL 695
            |:|.|..||.||.||.:..:||:||||.||.|.|:|..|.|.||.|.||.|||...:.|.|:|||
  Rat   482 YQCVCPRGFGGRHCELEYYKCASSPCRRGGICEDLVDGFRCHCPRGLSGPLCEVDVDLCEPNPCL 546

  Fly   696 EG-HCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPPCN--EGC-FANVSLATSATTTTTTTTTAT 756
            .| .|.|..:.|||.||.|..||:|...|..|....|.  :|| |...|.|..|.          
  Rat   547 NGARCYNLEDDYYCACPEDFGGKNCSVPRETCPGGACRVIDGCGFEAGSRAHGAA---------- 601

  Fly   757 TTRKMAKPSGLPCSGHGSCEMSDVGTF-CKCHVGHTGTFCEHNLNECSPNPCRNGGICLD----- 815
                   |||: |..||.|.....|.| |.|..|.|||:|..|:::|...||||||.|:|     
  Rat   602 -------PSGV-CGPHGHCVSLPGGNFSCICDSGFTGTYCHENIDDCMGQPCRNGGTCIDEVDSF 658

  Fly   816 ---------GD------------------------GDFTCECMSGWTGKRCSERATGCYAGQCQN 847
                     |:                        .||.|.|..||.||.|..|...|.|..|.|
  Rat   659 RCFCPSGWEGELCDINPNDCLPDPCHSRGRCYDLVNDFYCVCDDGWKGKTCHSREFQCDAYTCSN 723

  Fly   848 GGTCM-----------PG--------APDKALQPH----------------CRCAPGWTGLFCAE 877
            ||||.           ||        |.:.:..|:                |.|..||.|..|..
  Rat   724 GGTCYDSGDTFRCACPPGWKGSTCTIAKNSSCVPNPCVNGGTCVGSGDSFSCICRDGWEGRTCTH 788

  Fly   878 AIDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGGYSCIC 942
            ..:.|...||:|||.|..|..||||.||.||:|||||||::||...||..||||:|.|.||.|.|
  Rat   789 NTNDCNPLPCYNGGICVDGVNWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDEINGYRCSC 853

  Fly   943 PPGRHGLRCE--ILLSDPKSACQNASNTISPYTALNRSQNWLDIALTGRTEDDENCNACVCENGT 1005
            ||||.|.||:  ::.:.|   |.:..      .:.....:|:           |:||:|.|.:|.
  Rat   854 PPGRSGPRCQEVVIFTRP---CWSRG------VSFPHGSSWV-----------EDCNSCRCLDGH 898

  Fly  1006 SRCTNLWCGLPNCYKVDPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSRRVAP 1070
            ..|:.:|||...|. :.|  :.|.||..|...:.|.......||..||...|:|.|.:|      
  Rat   899 RDCSKVWCGWKPCL-LSP--QPSALSAQCPPGQQCREKAMGQCLQPPCENWGECTAEDP------ 954

  Fly  1071 PRLPAKSSCWPNQAVVNENCARLTILLALERVGKGASVEGLCSLVRVLLAAQLIKKPASTFGQDP 1135
              ||..:.|.|....::.||||||:....::|.:|.:|..:||.:|.|        ||:......
  Rat   955 --LPPSTPCLPRTTHLDNNCARLTLHFNRDQVPQGTTVGAICSGIRAL--------PATRAAARD 1009

  Fly  1136 GMLMVLCDLKTGTNDTVELTVSSSKLNDPQLPVAVGLLGELLSFRQLNGIQRRKELELQHAKLAA 1200
            .:|::|||..:.....||:.||.|...|  ||             ..:.||     ...||.:||
  Rat  1010 RLLLLLCDRASSGASAVEVAVSFSPARD--LP-------------DSSLIQ-----STAHAIVAA 1054

  Fly  1201 LT---------SIVEVKLETARVADGSGHSLLIGVLCGVFIVLVGFSVFISLYWKQRLAYRTSSG 1256
            :|         ::.|||:||. |..||...||:.|||.||.||....|.|.::|.::        
  Rat  1055 ITQRGNSSLLLAVTEVKVETV-VMGGSSTGLLVPVLCSVFSVLWLACVVICVWWTRK-------- 1110

  Fly  1257 MNLTPSLDALRHEEEKSNNLQNEEN-------LRRYTNPLKGSTSSLRAATGME------LSLNP 1308
                      |.:|.:.:.|..:|:       |....||::...||.....|.:      .:..|
  Rat  1111 ----------RRKERERSRLPRDESANNQWAPLNPIRNPIERPGSSGLGTGGHKDVLYQCKNFTP 1165

  Fly  1309 APELAASAASSSALH 1323
            .|..|..|....|.|
  Rat  1166 PPRRAGEALPGPASH 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966 34/81 (42%)
DSL 220..282 CDD:279722 29/61 (48%)
EGF_CA 350..388 CDD:238011 20/37 (54%)
EGF_CA 490..526 CDD:238011 19/35 (54%)
EGF_CA 610..645 CDD:238011 20/34 (59%)
EGF_CA 647..683 CDD:238011 19/35 (54%)
EGF_CA 798..833 CDD:238011 19/72 (26%)
EGF_CA 879..913 CDD:238011 18/33 (55%)
EGF_CA 916..952 CDD:238011 21/35 (60%)
VWC_out <993..1053 CDD:214565 19/59 (32%)
Jag2XP_038967750.1 MNNL 28..103 CDD:400141 34/81 (42%)
DSL 178..240 CDD:396134 29/61 (48%)
EGF_CA 307..345 CDD:238011 20/37 (54%)
EGF 351..381 CDD:394967 17/91 (19%)
EGF_CA 385..421 CDD:238011 19/35 (54%)
EGF_CA 423..458 CDD:238011 17/78 (22%)
EGF_CA 461..496 CDD:238011 20/34 (59%)
EGF_CA 502..534 CDD:238011 19/31 (61%)
EGF_CA 536..571 CDD:238011 16/34 (47%)
EGF_CA 636..671 CDD:238011 11/34 (32%)
EGF_CA 676..709 CDD:238011 8/32 (25%)
EGF 716..746 CDD:394967 10/29 (34%)
EGF_CA 757..787 CDD:238011 6/29 (21%)
EGF_CA <797..824 CDD:238011 17/26 (65%)
EGF_CA 827..863 CDD:238011 21/35 (60%)
VWC_out 872..943 CDD:214565 21/90 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338546
Domainoid 1 1.000 123 1.000 Domainoid score I5452
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 688 1.000 Inparanoid score I665
OMA 1 1.010 - - QHG45993
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 1 1.000 - - FOG0003067
OrthoInspector 1 1.000 - - otm44375
orthoMCL 1 0.900 - - OOG6_105778
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2046
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.810

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