DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and dsl-4

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_001359594.1 Gene:dsl-4 / 184563 WormBaseID:WBGene00001106 Length:368 Species:Caenorhabditis elegans


Alignment Length:460 Identity:99/460 - (21%)
Similarity:152/460 - (33%) Gaps:145/460 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 NLIALILILLVHKISAAGNFELEILEISNTNSHLLNGYC-----CGMPAELRATKTIGCSPCTTA 126
            :|:.|.|..:...:...||.|:.|.  |..:.::...:|     |..|    ..|.|........
 Worm     2 SLLLLFLFNVFINVRTHGNTEIRIQ--SGISVYVRVHFCTYSTRCSSP----LWKNIIPFEVIPE 60

  Fly   127 FRLCLKEYQTTEQGASISTGCSFGNATTKILGGSSFVLSDP---GVGAIVLPFTFRWTKSFTLIL 188
            |....:||.|.....::            |...|.:.::|.   |:..||:|.| |...:||:  
 Worm    61 FPFVFEEYFTRPTLPNV------------IFTISIYDINDEEPLGLEQIVVPLT-RHFSNFTV-- 110

  Fly   189 QALDMYNTSYPDAERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVTYYNTTCTTFC 253
                                                |...::.:.:.||..|...:...:|:.||
 Worm   111 ------------------------------------HTKNDSFLHFAVRNVCDENWRTHSCSIFC 139

  Fly   254 RPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGWRGPLCNEC 318
            :.|.|  ..:.|..:....|..|:.|.||::..|...|.. ||.|:.||:|.|..|:.|..|..|
 Worm   140 KDRSD--SKFKCDDDDGYKCAPGYSGPNCDKVDCPFNCHN-HGSCEVPGKCMCSQGFFGTYCEYC 201

  Fly   319 MVYPGCKHGS-------CNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCEN-TAPDKYR 375
            .....||||:       |:  .:.|.|...:.|...|:| :.|...:||:||....| |....:.
 Worm   202 KPSTTCKHGAVLVNELGCH--PYTCRCFEGYAGDNGDKD-DVCYYAKPCRHGNCVSNVTVSGGFE 263

  Fly   376 CTCAEGLSGEQCE--IVEHPCATRP-CRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSM 437
            |.|.:...|.:||  |....|:... |:|.|.|:.                              
 Worm   264 CICPKAFGGRRCEKRIARWDCSDEGYCQNKGVCSF------------------------------ 298

  Fly   438 RSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDE-CAGGPCEH 501
                        ::|.|                    .|.||.|:||..||....: |....|..
 Worm   299 ------------VDGIS--------------------RCRCAVGFTGKHCERKTAKTCLKKKCRE 331

  Fly   502 GGTCI 506
            |..||
 Worm   332 GFICI 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966 15/82 (18%)
DSL 220..282 CDD:279722 13/61 (21%)
EGF_CA 350..388 CDD:238011 11/38 (29%)
EGF_CA 490..526 CDD:238011 5/18 (28%)
EGF_CA 610..645 CDD:238011
EGF_CA 647..683 CDD:238011
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
dsl-4NP_001359594.1 DSL 110..166 CDD:366627 13/95 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.