DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Notch2

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:NP_035058.2 Gene:Notch2 / 18129 MGIID:97364 Length:2473 Species:Mus musculus


Alignment Length:968 Identity:283/968 - (29%)
Similarity:392/968 - (40%) Gaps:223/968 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 TSYSGVIL--------PSPEWKTLDHIGRNARITYRVRVQC--AVTYYNTTCT-----TFCRPRD 257
            |.::|::.        |.|     .|.|           ||  .:..|...|.     ..|..:.
Mouse   560 TGFTGILCDENIDNCDPDP-----CHHG-----------QCQDGIDSYTCICNPGYMGAICSDQI 608

  Fly   258 DQFGHYACGSEGQKLCL-NGWQ--------GVNCEEAICKAGCDP-VHGKC----DRPGECECRP 308
            |:.....|.::|:.:.| ||:|        |:|||........:| :||.|    :| ..|.|.|
Mouse   609 DECYSSPCLNDGRCIDLVNGYQCNCQPGTSGLNCEINFDDCASNPCMHGVCVDGINR-YSCVCSP 672

  Fly   309 GWRGPLC------------------------------------------NECMVYPGCKHGSCNG 331
            |:.|..|                                          |||:..| |.||:|.|
Mouse   673 GFTGQRCNIDIDECASNPCRKGATCINDVNGFRCICPEGPHHPSCYSQVNECLSNP-CIHGNCTG 736

  Fly   332 --SAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPC 394
              |.:||:||..|.|:.|:.|.|.| ...||::||||.|.. :.|||||.:|..|..|::....|
Mouse   737 GLSGYKCLCDAGWVGVNCEVDKNEC-LSNPCQNGGTCNNLV-NGYRCTCKKGFKGYNCQVNIDEC 799

  Fly   395 ATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLV 459
            |:.||.|.|||....|.       .|.|               ..|.:.....|.:....||...
Mouse   800 ASNPCLNQGTCFDDVSG-------YTCH---------------CMLPYTGKNCQTVLAPCSPNPC 842

  Fly   460 SLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTCIDLIGGFRCECPPEWHGDV 524
            ...::..:......|:|.||.||.|..|.:::|||...||.:.|.|.:..|.:.|||||.:.|..
Mouse   843 ENAAVCKEAPNFESFSCLCAPGWQGKRCTVDVDECISKPCMNNGVCHNTQGSYVCECPPGFSGMD 907

  Fly   525 CQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRN 589
            |:.|:|:|.|                                            .||.|...|.:
Mouse   908 CEEDINDCLA--------------------------------------------NPCQNGGSCVD 928

  Fly   590 QPGSFACICKEGWGGVTCAENLDDCVGQ-CRNGATCIDLVNDYRCACASGFKGRDCETDIDECAT 653
            ...:|:|.|..|:.|..|..::::|:.: |:||.||.|.||.|.|.|.:||.|..||.:||||..
Mouse   929 HVNTFSCQCHPGFIGDKCQTDMNECLSEPCKNGGTCSDYVNSYTCTCPAGFHGVHCENNIDECTE 993

  Fly   654 SPCRNGGECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCLE-GHCLNTPEGYYCHCPPDRAGK 717
            |.|.|||.|||.:..|:|:||:|::|..|......|:.:|||. |.|::....|.|.||....||
Mouse   994 SSCFNGGTCVDGINSFSCLCPVGFTGPFCLHDINECSSNPCLNAGTCVDGLGTYRCICPLGYTGK 1058

  Fly   718 HCEQLRPLCSQPPC-NEG----------CFANVSLATSATTTTTTTTTATTTRKMAKPSGLP--- 768
            :|:.|..|||:.|| |:|          |........:.......:..|...:|     |:|   
Mouse  1059 NCQTLVNLCSRSPCKNKGTCVQEKARPHCLCPPGWDGAYCDVLNVSCKAAALQK-----GVPVEH 1118

  Fly   769 -CSGHGSCEMSDVGTFCKCHVGHTGTFCEHNLNECSPNPCRNGGICLDGDGDFTCECMSGWTGKR 832
             |...|.|..:.....|:|.:|:||::||..|:||:.|||::|..|.|..|.:.|||:.|:.|..
Mouse  1119 LCQHSGICINAGNTHHCQCPLGYTGSYCEEQLDECASNPCQHGATCNDFIGGYRCECVPGYQGVN 1183

  Fly   833 CSERATGCYAGQCQNGGTCMPGAPDKALQPHCRCAPGWTGLFCAEAIDQCRGQP-CHNGGTCESG 896
            |......|....|||||||:    |......|.|.||..||.|.|.||:|.|.| |.|||.|...
Mouse  1184 CEYEVDECQNQPCQNGGTCI----DLVNHFKCSCPPGTRGLLCEENIDECAGGPHCLNGGQCVDR 1244

  Fly   897 AGWFRCVCAQGFSGPDCRINVNECSPQPC--QGGATCIDGIGGYSCICPPGRHGLRCEILLS-DP 958
            .|.:.|.|..||:|..|..::|||...||  :|...|:.....|:|||.....|..||..|. .|
Mouse  1245 IGGYTCRCLPGFAGERCEGDINECLSNPCSSEGSLDCVQLKNNYNCICRSAFTGRHCETFLDVCP 1309

  Fly   959 KSACQNASNTISPYTALNRSQNWLDIALTG--RTEDDENCNACVCENGTSRCTNLWCGLPNCYKV 1021
            :..|.|.....   .|.|....::.....|  ......:|....|..| .:|.:...| |.|:.:
Mouse  1310 QKPCLNGGTCA---VASNMPDGFICRCPPGFSGARCQSSCGQVKCRRG-EQCIHTDSG-PRCFCL 1369

  Fly  1022 DPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAKSSC 1079
            :|....|.                  |.|:||...|.|         .|.|.|...||
Mouse  1370 NPKDCESG------------------CASNPCQHGGTC---------YPQRQPPHYSC 1400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 15/77 (19%)
EGF_CA 350..388 CDD:238011 17/37 (46%)
EGF_CA 490..526 CDD:238011 14/35 (40%)
EGF_CA 610..645 CDD:238011 15/35 (43%)
EGF_CA 647..683 CDD:238011 18/35 (51%)
EGF_CA 798..833 CDD:238011 15/34 (44%)
EGF_CA 879..913 CDD:238011 16/34 (47%)
EGF_CA 916..952 CDD:238011 12/37 (32%)
VWC_out <993..1053 CDD:214565 11/59 (19%)
Notch2NP_035058.2 EGF_CA 109..143 CDD:238011
EGF_CA 182..218 CDD:238011
EGF_CA 260..296 CDD:238011
EGF_CA 298..335 CDD:238011
EGF_CA 415..454 CDD:238011
EGF_CA 456..492 CDD:238011
EGF_CA 495..530 CDD:238011
EGF_CA 532..567 CDD:238011 2/6 (33%)
EGF_CA 570..604 CDD:238011 8/49 (16%)
EGF_CA 608..643 CDD:238011 9/34 (26%)
EGF_CA 645..679 CDD:238011 10/34 (29%)
EGF_CA 682..717 CDD:238011 0/34 (0%)
EGF_CA 757..793 CDD:238011 17/37 (46%)
EGF_CA 795..831 CDD:238011 12/57 (21%)
EGF_CA 873..909 CDD:238011 14/35 (40%)
EGF_CA 911..947 CDD:238011 13/79 (16%)
EGF_CA 949..985 CDD:238011 15/35 (43%)
EGF_CA 987..1022 CDD:238011 18/34 (53%)
EGF_CA 1025..1061 CDD:238011 12/35 (34%)
EGF_CA 1117..1147 CDD:238011 8/29 (28%)
EGF_CA 1151..1185 CDD:238011 14/33 (42%)
EGF_CA 1188..1223 CDD:238011 15/38 (39%)
EGF_CA 1225..1262 CDD:238011 16/36 (44%)
EGF_CA 1264..1302 CDD:238011 12/37 (32%)
EGF_CA <1312..1343 CDD:238011 5/33 (15%)
Notch 1423..1456 CDD:333809
Negative regulatory region (NRR). /evidence=ECO:0000250 1425..1679
NL 1459..1496 CDD:197463
Notch 1501..1534 CDD:333809
NOD 1540..1591 CDD:311024
NODP 1621..1675 CDD:311559
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1755..1778
ANKYR <1820..1932 CDD:223738
ANK repeat 1828..1875 CDD:293786
ANK 1 1828..1872
ANK 2 1877..1906
ANK repeat 1878..1908 CDD:293786
ANKYR 1880..2067 CDD:223738
ANK 3 1910..1940
ANK repeat 1944..1975 CDD:293786
ANK 4 1944..1973
Ank_2 1949..2041 CDD:338493
ANK repeat 1977..2008 CDD:293786
ANK 5 1977..2006
ANK repeat 2010..2041 CDD:293786
ANK 6 2010..2039
GGN <2070..>2390 CDD:317988
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2098..2117
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2122..2169
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2382..2473
DUF3454 2385..2441 CDD:314760
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BAFT
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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