DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ser and jag1a

DIOPT Version :10

Sequence 1:NP_524527.3 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_005168261.1 Gene:jag1a / 140421 ZFINID:ZDB-GENE-011128-2 Length:1253 Species:Danio rerio


Alignment Length:1448 Identity:475/1448 - (32%)
Similarity:656/1448 - (45%) Gaps:363/1448 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 SACNLIALILILLVHKISAAGNFELEILEISNTNSHLLNGYCCG---MPAELRATKTIGCSPCTT 125
            :|.:...|:..|.:....|:|:||:::|.:.|.|..|.||.||.   .|||    ::.....|.|
Zfish    10 AALSAHVLLRCLWMRVCEASGHFEMQVLSMQNVNGELQNGACCDGARDPAE----RSCAADQCDT 70

  Fly   126 AFRLCLKEYQTTEQGASISTG--CSFGNATTKILGGSSFVL------SDPGVGAIVLPFTFRWTK 182
            .||:||||||     :.:|:|  ||:|:.:|.::||::|.:      :|.  ..|||||:|.|.:
Zfish    71 FFRVCLKEYQ-----SRVSSGGPCSYGSGSTPVIGGNTFSVKPLDQTNDK--TRIVLPFSFAWPR 128

  Fly   183 SFTLILQALDMYNTSYPDA--ERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVTYY 245
            |:|||::|||..|.|...:  .::||:...||:|.|:.:|:.|.|.|..|:..|::||.|...|:
Zfish   129 SYTLIVEALDFNNDSSTGSINGQVIEKAVQSGMINPNRQWQVLKHNGPVAQFQYQIRVTCDEHYF 193

  Fly   246 NTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPGW 310
            ...|..|||||||.||||.|...|.|.||.||.|..|..||||.||...||.|..||.|.|..||
Zfish   194 GFGCNKFCRPRDDFFGHYTCDHNGNKTCLEGWAGPECNTAICKQGCSIEHGSCKVPGNCRCLYGW 258

  Fly   311 RGPLCNECMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYR 375
            :|..|::|:.:|||.||:|. ..|:|:|||||||.|||:|||.|||.:||.:||||.||.||||.
Zfish   259 QGEYCDQCIPHPGCVHGTCI-EPWQCLCDTNWGGQLCDKDLNTCGTLQPCLNGGTCSNTGPDKYH 322

  Fly   376 CTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSL 440
            |.|.||.||:.||..::.|.:.||.|||.|.                 .|::|            
Zfish   323 CACPEGYSGQNCERADNACLSEPCLNGGLCV-----------------ESSLG------------ 358

  Fly   441 DHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTC 505
                                             |.|.||||||||:|.||.|:|:..||.|.|.|
Zfish   359 ---------------------------------FECQCAAGWTGPSCNINEDDCSPNPCNHSGVC 390

  Fly   506 IDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSA 570
            :||:.||:|.||.:|.|..|.:|.||||.                                    
Zfish   391 VDLVDGFKCICPVQWTGKTCLIDANECEE------------------------------------ 419

  Fly   571 VASTSLAIGPCINAKECRNQPGSFACICKEGWGGVTCAENLDDCVGQCRNGATCIDLVNDYRCAC 635
                    .||:||..|||..|.:.|.|..||.|..|..|::||.|||.||..|.||||.|||.|
Zfish   420 --------SPCVNAHSCRNLIGGYFCECLPGWTGQNCDINVNDCHGQCLNGGLCKDLVNGYRCVC 476

  Fly   636 ASGFKGRDCETDIDECATSPCRNGGECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCLEG-HC 699
            |:||.|..||.|:||||:.||.|||.|.|.:..|.|:||.|:||:.|:...:.|...||..| .|
Zfish   477 AAGFAGDRCERDVDECASRPCLNGGRCQDTLNGFQCLCPPGFSGATCQLDLDYCESGPCQNGAQC 541

  Fly   700 LNTPEGYYCHCPPDRAGKHCEQLRPLCSQPPCNEGCFANVSLATSATTTTTTTTTATTTRKMAKP 764
            .:....|||.||.|..||:|.||:..|...||        .:..|.|....:.:|         |
Zfish   542 FSLASDYYCKCPEDYEGKNCSQLKDHCLITPC--------QVIDSCTVAVVSNST---------P 589

  Fly   765 SGL------PCSGHGSCEMSD--VGTF-CKCHVGHTGTFCEHNLNECSPNPCRNGGICLD----- 815
            .||      .|..||.|....  .|.| |.|..|.|||:|..|:|:|..:||.:||.|:|     
Zfish   590 GGLRLISSSVCGPHGRCRSHSHAGGHFSCDCQDGFTGTYCHENINDCESSPCLSGGTCIDKINAY 654

  Fly   816 ----GDG-----------------------------DFTCECMSGWTGKRCSERATGCYAGQCQN 847
                .||                             ||.|||.:||.||.|..|.:.|....|.|
Zfish   655 QCICADGWEGPNCETNIDDCRTNPCRDRGVCRDLVNDFYCECENGWKGKTCHSRESQCDEDTCNN 719

  Fly   848 GGT-----------CMPG--------APDKALQPH----------------CRCAPGWTGLFCAE 877
            |||           |.||        |.:.:..|:                |.|..||.|..|::
Zfish   720 GGTCSDEGDSFKCLCSPGWEGATCNIAKNSSCLPNPCENGATCVVTGDGFTCVCKEGWEGPTCSQ 784

  Fly   878 AIDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGGYSCIC 942
            ..:.|..|||:|.|||..|..|:||.||.||:|||||||:|||...||..|:||:|.|.||.|:|
Zfish   785 NSNDCNPQPCYNSGTCVDGDNWYRCECASGFAGPDCRININECQSSPCAFGSTCVDEINGYRCLC 849

  Fly   943 PPGRHGLRCEILLSDPKSACQNASNTISPYTALNRSQNWLDIALTGRTEDD-----ENCNACVCE 1002
            ||||.|.||:.:...|   |                      .:.||...|     |:||.|.|.
Zfish   850 PPGRTGPRCQEVTGRP---C----------------------VIGGRIAVDGAKWAEDCNTCYCH 889

  Fly  1003 NGTSRCTNLWCGLPNCYKVDPLSKSSNLSGVCKQHEVCVPALSETCLSSPCNVRGDCRALEPSRR 1067
            .|...||.|:||...|..:      .:..|.|...::|||...|.|...||:.:|:|       .
Zfish   890 KGIVTCTKLFCGPKACRML------GSGRGDCPTGQMCVPVRDEQCFVKPCSSQGEC-------F 941

  Fly  1068 VAPPRLPAKSSCWP-------NQAVVNENCARLTILLALERVGKGASVEGLCSLVRVLLAAQLIK 1125
            |.|  ..::..||.       .....:.:||.:|.....:.:.:|.:||.:|..:|.|   .:.|
Zfish   942 VKP--CSSQGECWSAHRPTVRTHCQPDSHCANVTFTFNKDTMPQGVTVEQVCRELRHL---YVTK 1001

  Fly  1126 KPASTFGQDPGMLMVLCDLKTGTNDTVELTVSSSKLNDPQLPVAVGLLGELLSFRQLNGIQRR-- 1188
            ...|.|.     :.|.|:|.:..::.:.:.:..::                      |||..|  
Zfish  1002 NVTSEFS-----ISVSCELSSAASNEIHVAIHVTE----------------------NGIHGRVP 1039

  Fly  1189 -KE-------LELQH-AKLAALTSIVEVKLETARVADGSGH---SLLIGVLCGVFIVLVGFSVFI 1241
             ||       |..:| |..:.:.||.||:::..:..:.:..   .||:.|:..::::.:. |||:
Zfish  1040 VKEITDNIIDLVSKHSANSSVIGSIAEVRVQRKQPQNPNVDYMVPLLVSVVTAIWVLALA-SVFL 1103

  Fly  1242 SLYW------KQRLAYRTSSGMNLTPSLDALRHEEEKSNNLQNEENLRRYTNPLKGSTSSLRAAT 1300
               |      ||     :||...:.|:......||..:||.:  |:|.:..|.::.:.|: .:..
Zfish  1104 ---WCIRHHRKQ-----SSSATAINPTSPFSTPEENTANNAR--EHLNQIKNHIEKNASN-GSLP 1157

  Fly  1301 GMELSLNPA-----------PELAASAASSSALHRSQPLFPPCDFERELDSS-TGLKQ----AHK 1349
            |.||..:..           ||..||..........||.:...|.:..|.|: |.:|:    .:|
Zfish  1158 GKELHCDDKNTVNAKIRTQFPESDASRRLQKTRFPHQPAYMLVDRDDRLSSNGTDIKKHPQWTNK 1222

  Fly  1350 RSSQIL--LHKTQNSDMR 1365
            |.::.|  .|:..:|..|
Zfish  1223 RDNRDLESQHRVPDSQHR 1240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_524527.3 MNNL 83..238 CDD:462222 62/167 (37%)
DSL 220..282 CDD:128366 30/61 (49%)
EGF_CA 350..388 CDD:238011 24/37 (65%)
EGF_CA 490..526 CDD:238011 17/35 (49%)
EGF_CA 610..645 CDD:238011 21/34 (62%)
EGF_CA 647..683 CDD:238011 19/35 (54%)
EGF_CA 690..720 CDD:238011 12/30 (40%)
EGF_CA 798..833 CDD:238011 20/72 (28%)
EGF_CA 879..913 CDD:238011 18/33 (55%)
EGF_CA 916..952 CDD:238011 21/35 (60%)
VWC_out <993..1053 CDD:214565 20/64 (31%)
jag1aXP_005168261.1 MNNL 29..186 CDD:462222 62/167 (37%)
DSL 168..230 CDD:128366 30/61 (49%)
EGF_CA 297..335 CDD:238011 24/37 (65%)
EGF 341..370 CDD:394967 17/90 (19%)
EGF_CA 375..410 CDD:238011 17/34 (50%)
EGF_CA 413..448 CDD:238011 18/78 (23%)
EGF_CA 451..486 CDD:238011 21/34 (62%)
EGF_CA 488..524 CDD:238011 19/35 (54%)
EGF_CA 526..561 CDD:238011 13/34 (38%)
EGF_CA 632..668 CDD:238011 11/35 (31%)
EGF_CA 670..705 CDD:238011 9/34 (26%)
EGF 712..742 CDD:394967 9/29 (31%)
EGF 751..781 CDD:394967 6/29 (21%)
EGF_CA 787..820 CDD:238011 18/32 (56%)
EGF_CA 823..859 CDD:238011 21/35 (60%)
VWC_out 866..934 CDD:214565 23/95 (24%)

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