DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and Dll1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_011244569.1 Gene:Dll1 / 13388 MGIID:104659 Length:732 Species:Mus musculus


Alignment Length:685 Identity:229/685 - (33%)
Similarity:301/685 - (43%) Gaps:190/685 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 LIALILILLVHKISAAGNFELEILEISNTNSHLLNGYCC----GMPAELRATKTIGCSPCTTAFR 128
            |...::..|:.::.::|.|||::.|..|....|.|..||    |.|          |: |.|.||
Mouse     7 LALAVVSALLCQVWSSGVFELKLQEFVNKKGLLGNRNCCRGGSGPP----------CA-CRTFFR 60

  Fly   129 LCLKEYQTTEQGASIS--TGCSFGNATTKILGGSSFVLSDPGVG-------AIVLPFTFRWTKSF 184
            :|||.||     ||:|  ..|::|:|.|.:||..||.|.| |.|       .|..||.|.|..:|
Mouse    61 VCLKHYQ-----ASVSPEPPCTYGSAVTPVLGVDSFSLPD-GAGIDPAFSNPIRFPFGFTWPGTF 119

  Fly   185 TLILQALDMYNTSYPD------AERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVT 243
            :||::||   :|..||      .||||...:....:....||....|......:.|..|..|...
Mouse   120 SLIIEAL---HTDSPDDLATENPERLISRLTTQRHLTVGEEWSQDLHSSGRTDLRYSYRFVCDEH 181

  Fly   244 YYNTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRP 308
            ||...|:.|||||||.|||:.||..|:|:|..||:|..|.:.||..|||..||.||:||||:||.
Mouse   182 YYGEGCSVFCRPRDDAFGHFTCGDRGEKMCDPGWKGQYCTDPICLPGCDDQHGYCDKPGECKCRV 246

  Fly   309 GWRGPLCNECMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDK 373
            ||:|..|:||:.||||.||:|. ..|:|.|...|||:.|:||||:|..|:||::|.||.||    
Mouse   247 GWQGRYCDECIRYPGCLHGTCQ-QPWQCNCQEGWGGLFCNQDLNYCTHHKPCRNGATCTNT---- 306

  Fly   374 YRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMR 438
                                                                             
Mouse   307 ----------------------------------------------------------------- 306

  Fly   439 SLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGG 503
                    ||             ||          :||.|..|:||..||:.:||||..||::|.
Mouse   307 --------GQ-------------GS----------YTCSCRPGYTGANCELEVDECAPSPCKNGA 340

  Fly   504 TCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALT 568
            :|.||...|.|.|||.::|.||::....|                                    
Mouse   341 SCTDLEDSFSCTCPPGFYGKVCELSAMTC------------------------------------ 369

  Fly   569 SAVASTSLAIGPCINAKECRNQP-GSFACICKEGWGGVTCAENLDDC-VGQCRNGATCIDLVNDY 631
                    |.|||.|...|.:.| |.:.|.|..|:.|..|.:.:|.| ...|.|||.|:||.|.|
Mouse   370 --------ADGPCFNGGRCSDNPDGGYTCHCPLGFSGFNCEKKMDLCGSSPCSNGAKCVDLGNSY 426

  Fly   632 RCACASGFKGRDCETDIDECATSPCRNGGECVDMVGKFNCICPLGYSGSLCEEAKENCTPSPCLE 696
            .|.|.:||.||.||.::|:||:|||.|||.|.|.|..|:|.||.||:|..|......|..:||..
Mouse   427 LCRCQAGFSGRYCEDNVDDCASSPCANGGTCRDSVNDFSCTCPPGYTGKNCSAPVSRCEHAPCHN 491

  Fly   697 G-HCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPP 730
            | .|....:.|.|.|.....|.:|:.|.|   :||
Mouse   492 GATCHQRGQRYMCECAQGYGGPNCQFLLP---EPP 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966 31/83 (37%)
DSL 220..282 CDD:279722 26/61 (43%)
EGF_CA 350..388 CDD:238011 12/37 (32%)
EGF_CA 490..526 CDD:238011 17/35 (49%)
EGF_CA 610..645 CDD:238011 17/35 (49%)
EGF_CA 647..683 CDD:238011 19/35 (54%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
Dll1XP_011244569.1 MNNL 22..91 CDD:400141 31/84 (37%)
DSL 158..220 CDD:128366 26/61 (43%)
EGF_CA 287..325 CDD:238011 22/137 (16%)
EGF_CA 328..363 CDD:238011 17/34 (50%)
EGF_CA <372..402 CDD:238011 11/29 (38%)
EGF_CA <411..440 CDD:238011 15/28 (54%)
EGF_CA 442..477 CDD:238011 19/34 (56%)
EGF 484..514 CDD:394967 9/29 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834955
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D197806at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.850

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