DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ser and ccbe1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_002936721.3 Gene:ccbe1 / 100495021 XenbaseID:XB-GENE-920172 Length:394 Species:Xenopus tropicalis


Alignment Length:202 Identity:53/202 - (26%)
Similarity:73/202 - (36%) Gaps:59/202 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   614 CVGQCRNGATCIDLVNDYRCACASGFK---GRDCETDIDECATSPCRNGGECVDMVGKFNCICPL 675
            ||......|||      :|..|..|:|   |:....|.|.|:.:||..  :|.|..|:..|.|  
 Frog    51 CVKPSGELATC------FRKKCCKGYKFVLGQCIPEDYDVCSEAPCEQ--QCTDNFGRVLCTC-- 105

  Fly   676 GYSGSLCEEAKENCTPSP-CLE------------GH-CLNTPEGYYCHCPP----DRAGKHC--- 719
             |.|.|.:..:......| ||:            .| |:|||..|.|.||.    :..||.|   
 Frog   106 -YPGYLYDRERHRNREKPYCLDIDECASKNETVCSHICINTPGSYRCECPEGYSLEEDGKTCTKG 169

  Fly   720 -----EQLRPLCSQPPCNEGC------------------FANVSLATSATTTTTTTTTATTTRKM 761
                 |:...:.....|:|.|                  |...|::.|:...|.....|:|| .:
 Frog   170 SQGDFEKSNNVMKAGVCSETCKDFHQIKQTVLQLKQKLAFLPNSVSESSKHITAEKVLASTT-YV 233

  Fly   762 AKPSGLP 768
            ..|.|||
 Frog   234 QGPPGLP 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722
EGF_CA 350..388 CDD:238011
EGF_CA 490..526 CDD:238011
EGF_CA 610..645 CDD:238011 10/33 (30%)
EGF_CA 647..683 CDD:238011 13/35 (37%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
ccbe1XP_002936721.3 EGF_CA 126..167 CDD:214542 11/40 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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