DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and svep1

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_012808841.2 Gene:svep1 / 100493788 XenbaseID:XB-GENE-5996067 Length:3695 Species:Xenopus tropicalis


Alignment Length:927 Identity:209/927 - (22%)
Similarity:290/927 - (31%) Gaps:365/927 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 YPDAERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCAVTYYNTTCTTFCRPRDDQFGH 262
            :|....:::.|:    |.||...||.|               ..:|...:.|.....|::     
 Frog   689 FPVGRTVVQYTA----IDPSGNKKTCD---------------IYITIKGSPCEIPFTPQN----- 729

  Fly   263 YACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECECRPG-WRGPLCNECMVYPGCKH 326
                  |:..||...:|||| ..:||.|.....|..... .|..|.| |:.|...:   :|.|..
 Frog   730 ------GELACLKDVEGVNC-TLVCKEGYALAEGSTQNL-YCAFRDGLWKPPKRAD---WPDCSL 783

  Fly   327 GSCNGSAWKCV--------CDTNWGGIL---CDQDLNFCGTHEP--CKHGGTCENTAPDKYRCTC 378
            .......:|..        ||.|  .:|   .|...:..|...|  |......|....|:|:..|
 Frog   784 NRFANHGFKSFEMLYKATRCDDN--SLLKNFADAFQSSLGKMVPSFCTDADDIECRLEDQYQRQC 846

  Fly   379 AE-----------GLSG------------------EQCEIVEHPCA----TRPCR-------NGG 403
            .|           |.:|                  .:.|..|.|.:    |.|.|       |.|
 Frog   847 LEYNYDYENGFAIGPAGWGAANKLDYSYDEDFFDATETEDAEKPLSDSPHTAPLRVKRHRRLNAG 911

  Fly   404 TC----------------------TLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPE 446
            ..                      ||:..|  |.::..|....:|..:.:.|...:.|. |...|
 Frog   912 AADQKVKFIFNITASVPLPKQRNDTLEQEN--QQRLLLTLETLTNRLKRILRKEPLHSF-HFSSE 973

  Fly   447 GQALNGSS----------SPGLVSLGSLQLQQQLAPDFTCD---CAAGWTG-----------PTC 487
            ....:.:|          .||.|..|.:.:.......::.:   |.:.|||           .:|
 Frog   974 MIIADSNSLEDGKAFLFCRPGSVLKGRMCVNCPKGTYYSLEHRACESCWTGSYQDEEGQMDCKSC 1038

  Fly   488 EI----------NIDEC----------AGG-----PCEHGGTCIDLIGGFRCECPPEWHGDVCQ- 526
            ..          .|.||          :.|     .|.| ||...:.|...||..|.....|.: 
 Frog  1039 PAGTYTEYLHSKRISECKAQCKPGTYSSNGLETCESCPH-GTYQPVFGSKACEVCPNGMSTVKRG 1102

  Fly   527 -VDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKEC--- 587
             ||.:||..|..||                 ..|.|.|:               ||.   .|   
 Frog  1103 SVDKSECGVPCHAG-----------------EFSRTGLV---------------PCY---PCPRD 1132

  Fly   588 --RNQPGSFACICKEGWGGVTC--AENLDDC---------------------------------- 614
              :.:||...|:....:|..|.  |.::.||                                  
 Frog  1133 YYQPEPGKSYCLSCPFYGTTTISGARSIADCSSFGSSFSAAEESVMIPISPENVNSKYKVSSQVF 1197

  Fly   615 ----VGQCRNGATCIDLVNDYRCACASGFKGRDCETDIDECATSPCRNGGECVDMVGKFNCICPL 675
                :..|:|..||..:.:.|.|:|..|:.|..||.:|:||::.||||.|.|:|.||:|:|.|..
 Frog  1198 NECLLNPCQNSGTCTQIGSGYICSCIKGYTGAKCENEINECSSIPCRNNGICIDRVGEFDCQCLS 1262

  Fly   676 GYSGSLCEEAKENCTPSPCLEGHCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPPCNEGCFANVS 740
            |:||:||||                                                        
 Frog  1263 GFSGTLCEE-------------------------------------------------------- 1271

  Fly   741 LATSATTTTTTTTTATTTRKMAKPSGLPCSGHGSCEMSDVGTFCKCHVGHTGTFCEHNLNECSPN 805
                                                                     |:||||.|
 Frog  1272 ---------------------------------------------------------NINECSSN 1279

  Fly   806 PCRNGGICLDGDGDFTCECMSGWTGKRCSERATGCYAGQCQNGGTCMPGAPDKALQPHCRCAPGW 870
            ||.|..||:||...|.|.|.:|:.|.||......|.:..|.|.|.|    .|......|.|..|:
 Frog  1280 PCLNEAICIDGINAFYCRCANGFLGPRCEIEIDECLSRPCLNNGVC----DDLKAGFQCLCPAGY 1340

  Fly   871 TGLFCAEAIDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGI 935
            ||..|.:.||:|...||.||.:|..|...|||.|.:||:|..|.|||::|...||...|||:||:
 Frog  1341 TGKVCEKDIDECLSGPCKNGASCTDGINSFRCQCPEGFTGQVCEINVDDCVSNPCLNNATCVDGL 1405

  Fly   936 GGYSCICPPGRHGLRCE 952
            ..|.|.|.||..|:|||
 Frog  1406 NSYICKCQPGYSGIRCE 1422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 11/61 (18%)
EGF_CA 350..388 CDD:238011 10/68 (15%)
EGF_CA 490..526 CDD:238011 13/50 (26%)
EGF_CA 610..645 CDD:238011 11/72 (15%)
EGF_CA 647..683 CDD:238011 19/35 (54%)
EGF_CA 798..833 CDD:238011 18/34 (53%)
EGF_CA 879..913 CDD:238011 16/33 (48%)
EGF_CA 916..952 CDD:238011 17/35 (49%)
VWC_out <993..1053 CDD:214565
svep1XP_012808841.2 vWFA_subfamily_ECM 74..236 CDD:238727
Ephrin_rec_like 302..352 CDD:311571
PHA02927 <365..550 CDD:222943
CCP 430..486 CDD:153056
HYR 552..634 CDD:367105
DUF5011 646..716 CDD:383419 8/45 (18%)
Ephrin_rec_like 1008..1055 CDD:311571 6/46 (13%)
Ephrin_rec_like 1062..1109 CDD:311571 12/47 (26%)
Ephrin_rec_like 1116..1163 CDD:311571 13/81 (16%)
EGF_CA 1198..1232 CDD:238011 9/33 (27%)
EGF_CA 1235..1270 CDD:238011 19/34 (56%)
EGF_CA 1272..1308 CDD:238011 19/35 (54%)
EGF_CA 1311..1346 CDD:238011 11/38 (29%)
EGF_CA 1348..1384 CDD:238011 16/35 (46%)
EGF_CA 1386..1422 CDD:238011 17/35 (49%)
LamG 1422..1625 CDD:389952 1/1 (100%)
Sushi 1631..1688 CDD:365861
CCP 1693..1746 CDD:214478
EGF_CA 1748..1786 CDD:214542
PHA02927 <1791..1961 CDD:222943
PHA02639 1904..>2082 CDD:165022
PHA02927 2081..2322 CDD:222943
PHA02817 2321..>2439 CDD:165167
PHA02927 2404..2612 CDD:222943
PHA02927 2518..2773 CDD:222943
CCP 2777..2830 CDD:214478
PHA02927 2830..3061 CDD:222943
CCP 3066..3119 CDD:214478
PHA02927 3119..3355 CDD:222943
PHA02927 3257..3470 CDD:222943
PHA02927 3366..3586 CDD:222943
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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