DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and tnn

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_017949080.2 Gene:tnn / 100491528 XenbaseID:XB-GENE-998034 Length:1109 Species:Xenopus tropicalis


Alignment Length:967 Identity:222/967 - (22%)
Similarity:323/967 - (33%) Gaps:341/967 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   476 CDCAAGWTGPTCEINI--DECAGGPCEHGGTCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSA 538
            |.|..||.|..|....  :.|||     .|.|||.:    |:|.|.:.|..|    :|...|...
 Frog   152 CQCDEGWEGDDCSTKSCPNNCAG-----NGKCIDGV----CQCAPGYSGPDC----SEKVCPFDC 203

  Fly   539 GIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQPGSFACICKEGWG 603
            |                                     ..|.|        :.||  |.|.||:.
 Frog   204 G-------------------------------------KYGTC--------EDGS--CKCAEGYT 221

  Fly   604 GVTCAENLDDCVGQCRNGATCIDLVNDYRCACASGFKGRDCETDIDECATSPCRNGGECVDMVGK 668
            |..|.:.  .|...|....||:    |..|.|:.|:.|..|..  .:|... |...|:|:|    
 Frog   222 GPACRKK--KCPFDCGEFGTCV----DGTCQCSEGYTGPACRK--KKCPLD-CGEHGKCID---- 273

  Fly   669 FNCICPLGYSGSLCEEAK--ENCTPS-PCLEGHCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPP 730
            .:|.|..||.|..|:|.|  .:|.|: .|::|.|:                              
 Frog   274 GSCKCSEGYKGVDCKEKKCAVDCGPNGRCVDGQCV------------------------------ 308

  Fly   731 CNEGCFANVSLATSATTTTTTTTTATTTRKMAKPSGLPCSGHGSCEMSDVGTFCKCHVGHTGTFC 795
            ||:| |...|.:....:.                    |||||...|...|  |:|..|..||.|
 Frog   309 CNDG-FMGSSCSIEIASL--------------------CSGHGKYLMDTGG--CQCDDGWEGTDC 350

  Fly   796 EHNLNECSPNPCRNGGICLDGDGDFTCECMSGWTGKRCSERATGCYAGQCQNGGTCMPGAPDKAL 860
            ..  ..| ||.|.|.|:|:||    .|:|.||:||..||||.  | ...|...|:|:.||     
 Frog   351 SQ--RSC-PNNCDNNGVCVDG----VCQCFSGYTGLDCSERE--C-PFDCGEHGSCVDGA----- 400

  Fly   861 QPHCRCAPGWTGLFCAEAIDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCR----------I 915
               |:|:.|:|||.|.|  :.|... |...|.|:.|    :|.|.:||.|.||.          |
 Frog   401 ---CKCSVGYTGLTCRE--EDCLVN-CGENGRCDGG----QCFCEEGFIGEDCSEVITVQNLHLI 455

  Fly   916 NVNECSPQPCQGGATCIDGIGGYSCIC--PPGRHGLRCEILLSDPKSACQ-NASNTISPYTALNR 977
            :..|.|..........:|    |..:.  |....||:.||.:|..|...| ...|..:.|..|..
 Frog   456 SATEDSLSIAWDMLLEVD----YYLLVYYPLDNEGLKKEIQVSVDKDTYQIMGLNPGTKYKVLMY 516

  Fly   978 SQNWLDIALTGRTEDDENCNACVCENG-TSRCTNLWCGLPNCYKVDPLSKSSNLS----GVCKQH 1037
            :                      .:|| ||:...|            |:|:.::|    .|.::.
 Frog   517 N----------------------AKNGVTSQPAEL------------LAKTDSISLGTLWVAEET 547

  Fly  1038 EVCVPALSETCLSSPCNVRGDCRALEPSRRVAPPRLPAKSSCWPNQAVVNENCARLTILLALERV 1102
            |                   |...:|                |.| .:||.:..:|.....|   
 Frog   548 E-------------------DSLEVE----------------WEN-PIVNVDHYKLKYAQQL--- 573

  Fly  1103 GKGASVEGLCSLVRVLLAAQLIKKPASTFGQDPGMLMVLCDLKTGTNDTVEL-TVSSSKLNDPQL 1166
             .||.        |.::.:|         .|||.....:..|:..|:..:.: ||.|.....|. 
 Frog   574 -NGAE--------REVIVSQ---------SQDPKSRYTITGLQPSTSYQISVQTVRSGLEGKPS- 619

  Fly  1167 PVAVGLLGELLSFRQLNGIQRRKELEL--QHAKLAALTSIVEVKLETARVA--DGSGHSLLIGVL 1227
             .|||:.|       ::|.:.....|:  ..|.|:...|..::.....|.:  ||....:.:|  
 Frog   620 -TAVGVTG-------IDGPKNLVTTEVGEDTASLSWKGSQADIDKYMLRYSAHDGIAEEISLG-- 674

  Fly  1228 CGVFIVLVGFSVFISLYWKQRLAYRTSSGMNLTPSLDALRHEEEKSNNLQNEENLRRYTNPLKGS 1292
                              |:::   ::|..||||..:.:.|       |..|          ||:
 Frog   675 ------------------KEKI---STSLSNLTPGTEYMFH-------LWAE----------KGT 701

  Fly  1293 TSSLRAATGMELSLNPAPELAASAASSSA-LHRSQPLFPPCDFERELDSSTGLKQAHKRSSQILL 1356
            ..|.|.:......::|...|..|.:...| |..:||:.....:...|:.|.|.:|      :|.|
 Frog   702 QQSKRTSVTAVTEIDPPKNLQYSKSQPQASLTWNQPIAQIDGYVLVLEDSDGGQQ------EIQL 760

  Fly  1357 HKTQNS----DMRKN---TVGSLDSPRKDFGKRSINCK---SMPPSSGDEGSDVLAT 1403
            ..|.|:    |:.|.   ||..| :.|.|...|.:...   .:.|.:..:..||..|
 Frog   761 DSTVNNFELQDLNKGLKYTVYLL-AYRGDRRSRQVTTSFYTDIDPPTNLQSFDVTQT 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722
EGF_CA 350..388 CDD:238011
EGF_CA 490..526 CDD:238011 11/37 (30%)
EGF_CA 610..645 CDD:238011 9/34 (26%)
EGF_CA 647..683 CDD:238011 10/35 (29%)
EGF_CA 798..833 CDD:238011 15/34 (44%)
EGF_CA 879..913 CDD:238011 10/33 (30%)
EGF_CA 916..952 CDD:238011 7/37 (19%)
VWC_out <993..1053 CDD:214565 10/64 (16%)
tnnXP_017949080.2 exchanger_TraA <124..432 CDD:411343 115/430 (27%)
fn3 449..513 CDD:394996 15/67 (22%)
fn3 543..619 CDD:394996 22/132 (17%)
fn3 630..707 CDD:394996 20/116 (17%)
fn3 716..788 CDD:394996 21/78 (27%)
fn3 803..879 CDD:394996 4/14 (29%)
FReD 895..1105 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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