DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and vwdel

DIOPT Version :9

Sequence 1:NP_001287558.1 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_001345360.4 Gene:vwdel / 100006681 ZFINID:ZDB-GENE-131121-540 Length:1721 Species:Danio rerio


Alignment Length:1210 Identity:270/1210 - (22%)
Similarity:380/1210 - (31%) Gaps:498/1210 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 QALDMYNTSYPDAERLIEETSYSGVILP-------SPE-----WKTLDHIGRNARITYR-VRVQC 240
            |:...::.|.|:    ::|::|:   .|       ||:     |.|      .:.:|.| .|..|
Zfish   705 QSRQFHSRSSPN----LQESAYN---FPEDHSLWVSPDALVFSWPT------ESGLTEREARRLC 756

  Fly   241 AVTYYNTT-------------------CTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAI 286
            ..|..|:|                   |....:.:|||                .|.|...  |:
Zfish   757 ESTLRNSTVGSGCWSLLGKVIEPAVEMCVVDLQLKDDQ----------------AWVGATV--AL 803

  Fly   287 CKAGCDPVHGKCDRPGECECR----PGWRGPLCNECMVYPGCKHGSCNGSA----WKCVCDTNWG 343
            .:             .|||.|    ..||.. ..:.:|...|. ..|:|:.    |.|.|...:|
Zfish   804 LE-------------NECERRLLEEVKWRKE-NRDVLVSLKCP-SLCSGNGQCTDWGCSCFPGFG 853

  Fly   344 GILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLK 408
            ...|.|                                :|.|..||.|       ..|||.|.::
Zfish   854 SFDCSQ--------------------------------ISDETPEITE-------LENGGLCDVQ 879

  Fly   409 TSNRTQAQVYRTSHGRSNMGRPVRRSSSMR-------------SLDHLRPEGQALNGSSS----- 455
            ....:..:|:         |:..::|..::             |||..|....:...||:     
Zfish   880 YGVCSSVKVF---------GQGFKKSYKLKCEVVKEKIVDSEWSLDDARLVPASFQSSSALECQI 935

  Fly   456 PGLVSLGSLQ--LQQQLAP----------------DFTCD-CAAGWT------GPTCEIN----- 490
            |...|..:.|  |:.|:..                |.||. |....|      ..||.|:     
Zfish   936 PADPSTTAHQPVLRWQIKVSNDGHSFSNAKILTLFDGTCQICTVSSTVICTLKNRTCSIDGVCFG 1000

  Fly   491 -IDECAGGPCEHGGTCIDLIGGFRCEC-----PPEWH----------GD--VCQVDVNECE---- 533
             .|.....||.   ||...:..:....     ||.:|          |:  |.|...::.|    
Zfish  1001 EGDHSPNSPCL---TCRPDLSKYSWSIAEKNEPPVFHPGQSTLKAFSGEDFVYQFSASDPEGSAV 1062

  Fly   534 ------APHSAGIAANALLTTTATAIIGSNLSSTAL---LAALTSAVASTSLAIGPCINAKECRN 589
                  .|..|       |.:.|..:|...||||.:   ||......|.|..|:...::..:|:|
Zfish  1063 FFTLRSGPRDA-------LLSPAGLLIWKALSSTPVTLDLAVTDDCNAVTQAAVKVSVDPCDCQN 1120

  Fly   590 ----------QPGS--FACICKEGWGGVTCAENLDDC-VGQCRNGATCIDLVNDYRCACASGFKG 641
                      .|||  :.|:|..|..|:.|..::||| ...|.:| ||:|.:|.:.|.|:.||.|
Zfish  1121 GASCVTNMNFPPGSGEYLCVCPVGLEGLKCETDVDDCRSNPCLSG-TCVDALNSFTCQCSEGFTG 1184

  Fly   642 RDCETDIDECATSPCRNGGECVDMVGKFNC-ICP---LGYSGSLCEE------------------ 684
            ..|:.|||||.:|.|.:|..|.:.||.|.| .||   :| .|..|::                  
Zfish  1185 VICDEDIDECLSSLCYSGVSCRNTVGSFVCGPCPDQLIG-DGMTCKQKTVDKINEGTHEITLESV 1248

  Fly   685 ------------AKENCTPSPCLEG-HCLN---TPEGYYC-HCPP--DRAGKHCEQLRPLCSQPP 730
                        .|..||..||..| .|..   |..||.| .|||  :..|:.| ..|....|.|
Zfish  1249 VKLNSFKPKLIPGKSPCTSRPCYPGVQCFESTYTSAGYICGPCPPGLNGNGQTC-MSRTANRQTP 1312

  Fly   731 CNE-GCFANV--SLATSATT----------------------------------TTTTTTTATTT 758
            ..| |..::|  ||.|..:|                                  ||.|....::|
Zfish  1313 LKEDGKLSDVTSSLVTPYSTRKSAEFHAEADRSSASSRWSSPVDRRTITNLDRSTTKTKDNQSST 1377

  Fly   759 RKMAKPSGL-----------PCSGHGSCEMSDVGTF----------------------------- 783
            .|.:....|           ||.....|:.:..|:|                             
Zfish  1378 SKQSHEEELNPKDNRTCVDSPCFSGVVCDDTSSGSFRCRDCPNGYEGNGITCKPTCRYPCGQNME 1442

  Fly   784 --------------------------------------CKCHVGHTGTFCEHNLNECSPNPCRNG 810
                                                  |:|.:|::|..||..:  |.| ||::|
Zfish  1443 CSQPNTCTCKEGYTGYNCHIAVCRPDCKNKGKCVKPSVCECPLGYSGQTCEEAI--CDP-PCQHG 1504

  Fly   811 GICLDGDGDFTCECMSGWTGKRCSERATGCYAGQCQNGGTCMPGAPDKALQPHCRCAPGWTGLFC 875
            |.||..:   .|.|..|:.|.||.......:   |:|||.|:  :||.     |:|.|||.|..|
Zfish  1505 GRCLSRN---HCTCPYGYVGPRCETMVCNRH---CENGGECV--SPDV-----CKCKPGWYGPTC 1556

  Fly   876 AEAIDQCRGQPCHNGGTCESGAGWFRCVCAQGFSGPDCRINVNECSPQPCQGGATCIDGIGGYSC 940
            ..|  .|: ..|.|||||....   .|||..||.|..|:|.:  |:| ||:....|   :....|
Zfish  1557 NSA--DCK-PVCLNGGTCLKPN---VCVCPSGFYGSQCQIAL--CNP-PCKNRGQC---MRNNVC 1609

  Fly   941 ICPPGRHGLRCEILLSDPKSACQNASNTISPYTALNRSQNWLDIALTGRTEDDENCNACVCENGT 1005
            .||.|..|.||:..:.||  .|.|....:.|                         |.|.|.:| 
Zfish  1610 SCPEGYTGKRCQKSVCDP--MCLNNGKCVGP-------------------------NTCSCPSG- 1646

  Fly  1006 SRCTNLW----CGLPNCYKVDPLSKSSNLSGVCKQHEVC------------VPALSETCLSSPCN 1054
                  |    |.:|.|     |.|..| .|.|.....|            .|...:|||:.   
Zfish  1647 ------WRGGICNIPVC-----LQKCRN-GGECVGPNTCHCPAGWEGWQCQTPICKQTCLNG--- 1696

  Fly  1055 VRGDCRALEPSRRVAPPRLPAKSSCWPNQAVVNENCARLT 1094
              |.|        |.|      :.|...|.....:|...|
Zfish  1697 --GRC--------VFP------NFCHCRQGYTGPSCGTKT 1720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_001287558.1 MNNL 83..161 CDD:284966
DSL 220..282 CDD:279722 15/81 (19%)
EGF_CA 350..388 CDD:238011 2/37 (5%)
EGF_CA 490..526 CDD:238011 10/58 (17%)
EGF_CA 610..645 CDD:238011 14/35 (40%)
EGF_CA 647..683 CDD:238011 17/39 (44%)
EGF_CA 798..833 CDD:238011 12/34 (35%)
EGF_CA 879..913 CDD:238011 13/33 (39%)
EGF_CA 916..952 CDD:238011 11/35 (31%)
VWC_out <993..1053 CDD:214565 18/75 (24%)
vwdelXP_001345360.4 VWD 422..580 CDD:295339
EGF_CA 1153..1187 CDD:238011 14/34 (41%)
EGF_CA 1190..1229 CDD:214542 17/39 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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