Protein Alignment CG5909 and scaf

DIOPT Version :10

• Sequence 1: NP_651544.1
• Gene: CG5909 / 43274
• FlyBaseID: FBgn0039495
• Length: 381
• Species: Drosophila melanogaster
• Sequence 2: NP_610180.1
• Gene: scaf / 35505
• FlyBaseID: FBgn0033033
• Length: 655
• Species: Drosophila melanogaster
• Alignment Length: 354
• Identity: 85/354 - (24%)
• Similarity: 150/354 - (42%)
• Gaps: 81/354 - (22%)

  Fly    54 NIPRKIHNQISEMQCRSTTNTRDFHLC----CPNEAPPQ-SNQESQRKV-----VRSEGGNLNRY 108
            |:|:......|.:.|.|.      :.|    ..:|.|.: |..|:..:|     :::|.|:..:.
  Fly   336 NVPKHFAKCASALVCTSE------NFCNAIGVLSETPVELSPMEAAFRVPLTDCLQTENGSPGKC 394

  Fly   109 DRQGLQL----LNSVTNCGNKG-NPKVSGGK--TARPGDFPWVALLKYKINDPRPFRCGGSLISE 166
            .|....:    :|....|..:. ..|.:|.|  .|...:.||.|::..:  ..:...|||::|.:
  Fly   395 CRDPNYVDPWPVNLAGVCATRNKRTKPTGVKDLDANFAEIPWQAMILRE--SSKTLICGGAIIGD 457

  Fly   167 RHILTAAHCIIDQPEV-IAVRLGEHDLESEEDCHYLGGTNRVCIPPYEEYGIEQIRVHPNYVHGK 230
            :.:|::|.|:...|.. |.|:.||.:         ||.||...  |::..|::.:.|||:|....
  Fly   458 QFVLSSASCVNGLPVTDIRVKAGEWE---------LGSTNEPL--PFQLTGVKTVDVHPDYDPST 511

  Fly   231 ISHDVAIIKLDRVVKEKSHIKPVCLPIDQKSQELDFDQSFFVAGWGGTEKETVATKLQQALI--- 292
            .|||:|||:|:|.::..|||:|:|:. |:..::   .:..|.:|||   |:.::...:.||:
  Fly   512 NSHDLAIIRLERRLEFASHIQPICIS-DEDPKD---SEQCFTSGWG---KQALSIHEEGALMHVT 569

  Fly   293 --TRKSLNECRQYYNKGEVSDNHICATGTGIKHTCQGD--------SGGPVFFKHRFKNTYRVVQ 347
              ..::.:||       ....:.:|:...  ..:||.|        ||..|..|..|.
  Fly   570 DTLPQARSEC-------SADSSSVCSATK--FDSCQFDVGSALACGSGSSVRLKGIFA------- 618

  Fly   348 YGVVSFGGRLCGQNQPGVFASVIDMLPWI 376
                  |...||:.|...||.  ..:.||
  Fly   619 ------GENSCGEGQTVRFAK--PDIKWI 639

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5909	NP_651544.1	CLIP	25..82	CDD:197829	6/31 (19%)
		Tryp_SPc	132..379	CDD:238113	68/261 (26%)
scaf	NP_610180.1	Atrophin-1	<63..>338	CDD:460830	1/1 (100%)
		CLIP_SPH_Scar	343..408	CDD:465747	12/70 (17%)
		Tryp_SPc	428..616	CDD:238113	57/216 (26%)