DRSC/TRiP Functional Genomics Resources

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Protein Alignment grass and CG4998

DIOPT Version :9

Sequence 1:NP_651543.1 Gene:grass / 43273 FlyBaseID:FBgn0039494 Length:377 Species:Drosophila melanogaster
Sequence 2:NP_001036609.1 Gene:CG4998 / 39808 FlyBaseID:FBgn0036612 Length:1185 Species:Drosophila melanogaster


Alignment Length:352 Identity:97/352 - (27%)
Similarity:159/352 - (45%) Gaps:76/352 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RTIEERLTEAQKAGQKVPADYASYLQKALCGEFNGVRHFCC-----PSANIQHNSKVMSLFKDEN 108
            |::|:.:. |..|.::..|.|.:...:..|    .:...||     |.|..|...:         
  Fly   870 RSVEDGVW-AGAAPKEQRAYYGNRPVEKTC----RINEVCCRRPLRPQAPPQQFGR--------- 920

  Fly   109 FDCG----NFLSQRVSNGYEV----KLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCV 165
              ||    ..::.|:.|...|    :....||...:..:...||.:.|||.:|..::|::||||:
  Fly   921 --CGVRNAAGITGRIKNPVYVDGDSEFGEYPWHVAILKKDPKESIYACGGTLIDAQHIISAAHCI 983

  Fly   166 HGLQN--DLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLK 228
            .. ||  || .:||||..::.:.:..          |.:...:....||.:|.|..:.:|:|:||
  Fly   984 KS-QNGFDL-RVRLGEWDVNHDVEFF----------PYIERDVVSVHIHPEYYAGTLDNDLAVLK 1036

  Fly   229 LNRSVPFQK--HIKPICLPITDELKEKAEQISTY-----FVTGWGTT---ENGSSSDVLLQANVP 283
            |::.|.|.|  ||.|.|||         ::.|.:     :.||||..   |:|...::|.:.:||
  Fly  1037 LDQPVDFTKNPHISPACLP---------DKYSDFTGARCWTTGWGKDAFGEHGKYQNILKEVDVP 1092

  Fly   284 LQPRSACSQAYRR-----AVPLSQ--LCVGGGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGI 341
            :.....|....|.     :..|:.  :|.||.:.:|:||||.||||      :.:....|...|:
  Fly  1093 ILSHQQCESQLRNTRLGYSYKLNPGFVCAGGEEGKDACKGDGGGPL------VCDRNGAMHVVGV 1151

  Fly   342 VSQGVVTCGQISLPGLYTNVGEYVQWI 368
            ||.| :.|||:::||:|..|..|:.||
  Fly  1152 VSWG-IGCGQVNVPGVYVKVSAYLPWI 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
grassNP_651543.1 CLIP 32..90 CDD:197829 9/45 (20%)
Tryp_SPc 121..371 CDD:238113 82/271 (30%)
CG4998NP_001036609.1 Tryp_SPc 942..1180 CDD:238113 80/264 (30%)
Tryp_SPc 942..1177 CDD:214473 78/262 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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