DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6051 and lst-2

DIOPT Version :9

Sequence 1:NP_001097943.1 Gene:CG6051 / 43271 FlyBaseID:FBgn0039492 Length:989 Species:Drosophila melanogaster
Sequence 2:NP_508756.2 Gene:lst-2 / 180712 WormBaseID:WBGene00003084 Length:661 Species:Caenorhabditis elegans


Alignment Length:1027 Identity:285/1027 - (27%)
Similarity:407/1027 - (39%) Gaps:405/1027 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDTFKRWLNKPKADDKSLLARFFHADRSLTAVASELDSFDGRAEPDRCTRLVSRLRQNQDKVLAI 65
            |.:|::..|||:.||...||||::||.:|..:||||||||||.:||||..||:|||..||:||  
 Worm     1 MQSFRKIWNKPRPDDWMPLARFYYADSALNDIASELDSFDGRRDPDRCNALVTRLRVAQDRVL-- 63

  Fly    66 TNLIMEELL-----GEDRDPRAFRAKFPEEVLQENLAGQLWFGAECLAAGSSIMNRETESKEMRP 125
             ::|.|.|:     .:||..|.||.|||:|:|.:.|.||||||||||:|||:|::.||||..:||
 Worm    64 -HIITEMLIHLYPREQDRACRDFRVKFPDEILHDTLPGQLWFGAECLSAGSNIIDHETESDLIRP 127

  Fly   126 LAQAVTKSLGNVRVLLRDQCLKNNVPNSKTLHLDLNDSTTEQLYESLKIFDRLFAEFELSYVSAM 190
            ||:.|||.|..:|.||::|.|::  |:          :....:.|:|..||:||||||..|||||
 Worm   128 LAKDVTKQLDFLRDLLKNQSLRD--PS----------AYNPVIKENLLKFDKLFAEFEYQYVSAM 180

  Fly   191 VQVKSRHEYEMQQWIGVLFSETLQRALKIGLLDQEMVDAFDPGLMFSIPRLAIVAGLVVYAKGPL 255
            |.|||..|::.|..:.|||||.|..||...|:.|:::|..||.:|.:||||.||.||:||:.|.|
 Worm   181 VPVKSVKEHDSQLDVAVLFSEVLSLALVKDLITQDLIDYCDPSVMIAIPRLGIVWGLLVYSNGAL 245

  Fly   256 NMDMPGDQLSEMFRPFRTILIKIRDLLRNLNNQELYQLEKLLCTNEDINTKVPLGSSSIEAPSPE 320
            |:|:|.:.||||||||.::|:|||:|||.|...||.:||.:||..|   :.||..:||....|..
 Worm   246 NVDVPAENLSEMFRPFYSLLVKIRNLLRILTPTELTKLETVLCKGE---SAVPEDTSSTLTMSDF 307

  Fly   321 HSSHPTTSSSQNNN--------NSSNNNHSSSSTNTTSTTTTTAGT--TNTHRTVERLVDQRNNN 375
            .::......::||.        :.|.::..||..:::|.||:.|.:  .:.|...|..|.|..|.
 Worm   308 RTNATDEEKAKNNQRVWMCDMPSDSTSSLDSSVQDSSSETTSLASSALASPHSGSEENVSQIENE 372

  Fly   376 H------NSNSNSSTNPTVEAATLRSPSMLSLSATSTPTASPAPSPTPSHSIASTSSAATSSTNP 434
            .      .:|||||...|....|:..|                                      
 Worm   373 EGDDEAIGTNSNSSNEVTESPETIEEP-------------------------------------- 399

  Fly   435 PADWSDGDDEDEDDDDIDVDEEDIESSDDGTDEEQLLKDIVSAD---CASGYLIPNTNLGNLLQP 496
              |..|.::..|.:.|..:||...||.|:.||:.| ..|::..:   |.|..|            
 Worm   400 --DNVDMEESSESEVDTHIDETRNESDDEITDDVQ-ASDVLQVETKKCKSSRL------------ 449

  Fly   497 QEVPLTDNFVASEDDEYGTAEQQGHQGLEEDEPSTSAAMLAATRTLQRLRLPSSDNEPLAEPTTI 561
                                       ||:.:...|...:...:|..|.::              
 Worm   450 ---------------------------LEQKKFDKSVKTIIPMQTDPRSQI-------------- 473

  Fly   562 KASEEHMQQPSGRHRDSHSHRHHQRHHHHHHHRHPHQHQHRQPHPHRTTRSGRKRCSLEAADPER 626
                                                                         ||:.
 Worm   474 -------------------------------------------------------------DPKN 477

  Fly   627 IQPDREQNLASGDTSAASSLSDDVSLAMRNTTARLKFKSTENLLHRLFVCIAGVADQLQTNFASD 691
            :                                |.:|:|:|:|:|||||||||||||||||::|:
 Worm   478 L--------------------------------RSRFRSSEDLVHRLFVCIAGVADQLQTNYSSE 510

  Fly   692 LRQILRSVFLMNMSTAQEEIDIPEKTKESELFEFRASENDVIQESAGSNQSIYSAEEVNPELDNV 756
            :|::|:.:.                 :.||:.                  .:|  |.||.::   
 Worm   511 IRKVLKLIL-----------------QPSEII------------------PVY--EVVNAQV--- 535

  Fly   757 FSAGGGNQATGQRHSAGASMQRNNTIDLASQPGEGSPSGATTATSRSHVTRSRSLGDQEAASSAT 821
                                                                             
 Worm   536 ----------------------------------------------------------------- 535

  Fly   822 SSTAQLRQLEQQQQQQQLQIQLQRQRNNSVGSNTPSSASSTSSSSEQNSPVSARSGSRRRLQSNN 886
                                           :|:.:....|...:::..|:.|..|.|       
 Worm   536 -------------------------------ANSQTEGEETGVEAQETLPLPAFMGVR------- 562

  Fly   887 ETQMPSSATSTSATLSPPAWIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPK 951
                               |:||....:|.||..||...||||||||||.:||..||..:..:|:
 Worm   563 -------------------WVPDEDCEQCTACSMPFNFVRRRHHCRNCGRIFCHKCSCNTISIPE 608

  Fly   952 YGLTKAVRVCRDCYVREVRS-------------GMGVQGVQSVQSVQ-ASAS 989
            :|..:.||||..|||..:.|             |..|..|...||.| ||||
 Worm   609 HGYDRKVRVCNLCYVHRLNSFGCNEPMSQVNENGATVPSVTEQQSAQTASAS 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6051NP_001097943.1 FYVE_LST2 902..966 CDD:277270 29/63 (46%)
lst-2NP_508756.2 SDA1 <361..>453 CDD:283052 30/171 (18%)
FYVE_LST2 559..623 CDD:277270 31/89 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163334
Domainoid 1 1.000 358 1.000 Domainoid score I505
eggNOG 1 0.900 - - E1_KOG1819
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H34892
Inparanoid 1 1.050 445 1.000 Inparanoid score I916
Isobase 1 0.950 - 0.946395 Normalized mean entropy S4566
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215217at33208
OrthoFinder 1 1.000 - - FOG0005719
OrthoInspector 1 1.000 - - oto18028
orthoMCL 1 0.900 - - OOG6_107592
Panther 1 1.100 - - LDO PTHR46465
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2108
SonicParanoid 1 1.000 - - X4713
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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