DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5882 and lamb1a

DIOPT Version :10

Sequence 1:NP_651540.1 Gene:CG5882 / 43269 FlyBaseID:FBgn0039490 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_775382.1 Gene:lamb1a / 286830 ZFINID:ZDB-GENE-021226-1 Length:1785 Species:Danio rerio


Alignment Length:666 Identity:132/666 - (19%)
Similarity:257/666 - (38%) Gaps:163/666 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ELCDKIPEATKALRQKDTPNNADNVQRLLICGSRYKSDLRLE--KERSQELRKEIESLEERLENA 86
            |:...:.:||..:.:.::..|........|......:|.:|:  ||.:|:|.:.::.|.|::|..
Zfish  1242 EIQGLLEQATALMAEMNSNLNLTEETLSEISSDNNSTDTKLKSLKEEAQKLEQTVKDLREQVEFV 1306

  Fly    87 ARVTKLDMATIEELRGVIEGAWKQKDAAQIREQSAQDEVLSLREKLDESEQMVAHLNEKRLAMSK 151
            ..      :.|...|..:...::|...|:||..::..:..:|             :|:.....::
Zfish  1307 KN------SDIRGARASVTRYYEQSQNAEIRANASTTDPYNL-------------VNQSATLRTE 1352

  Fly   152 RDDGKERERLNAEIADLNKRLHLQRTYATELDHTIEGLEAKNKELLKLLDETSSDACNLKRKSDA 216
            .:     |.:|....:.|:|   |..::.:||:....||  ..:|.:|.::|.......:..:|:
Zfish  1353 TE-----ELMNQTKEEFNQR---QDEFSKKLDNLAGQLE--TLDLSELSEKTCGSPAGSENCADS 1407

  Fly   217 LTKELSTMKTEESRYQEQISQMKSANEHLTKVKVRQNLQILSLKTNLEHLNTQHNAANNKLAKIT 281
            ....||.:..:.||        |...|                  ..:.|.|..:.|..|.....
Zfish  1408 RCGGLSCVDMQGSR--------KCGGE------------------GCDGLTTLAHNAWQKAKDFD 1446

  Fly   282 VDLEYTVQERDKNKRALNQRINLLKVREDELIKVRQDNGKLAKSQEAIARKYAVLDEAKREVETL 346
            :::...::|.||..:.:::            .||:.|..|| .:||.:|:    .:|.|:.|::.
Zfish  1447 LEIISAMEEVDKLSKMVSE------------AKVKADEAKL-NAQEVLAK----TNETKKRVDSS 1494

  Fly   347 NIRLRTQLG------TQD-KELESMRRVVHHFEKNNENLTKERDSLRRELQAEHHQLEQSNAQHQ 404
            |..||..:.      ||| .:|||:..|.      ||.|              ..|:..:.||.|
Zfish  1495 NEELRQLIKQIRDFLTQDGADLESIEAVA------NEVL--------------QMQMPTTPAQLQ 1539

  Fly   405 EAQHEVRALKDTITTMD----------TKLKKLNEDANKLKKEKT--KKLDEIQHWIDKLDALQN 457
            ....|:|....::|.::          .:.:.|.|.|.|.:||.:  |...|:..     :|||:
Zfish  1540 NLTEEIRERVGSLTDVEDILNQSAADILRAESLLEQARKARKEASDVKSTAEMVK-----EALQH 1599

  Fly   458 EMHLKENYEIELKRTISDLEAKCSKFQQQHDGLAAERQTLQRSVQLADEERQKLRDQLVNLQAHV 522
            ....:.:....||:...|::.      .|...::.|.:|....::|::..|     :|:.|::.|
Zfish  1600 AERAQNSVAEALKQAAVDIKG------TQDLLVSVESETSDSELKLSNATR-----RLLKLESDV 1653

  Fly   523 EKLKAKIGYRDGEISRLQLQIDRMEKERRLLRNEIRHAQLGQQHTK---AELLDKRKEND----R 580
            ..||.|       .....:..:..|||...:.      .|.:|..|   :||.||....:    :
Zfish  1654 ALLKEK-------ALNTSISANSTEKEAESIN------ALAEQLKKDLDSELKDKYSTVEELITQ 1705

  Fly   581 HAKSLQEDEQKLARLRKDVDNLMNEKNAISAALTKRNEEFDRLKHSQENLQTVYDQTQRQCSQYQ 645
            .|:.:.|.:::..:|:::..||          |.:.:|:...||    ||:..|||.|:......
Zfish  1706 KAEGVAEAKKRAEKLQEEARNL----------LLQASEKLQLLK----NLEKNYDQNQKLLEDKA 1756

  Fly   646 DDMRLMGVEIKNLRTE 661
            :::..:...:|.|..|
Zfish  1757 NELVDLEKAVKELLQE 1772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5882NP_651540.1 SMC_prok_B <70..391 CDD:274008 63/327 (19%)
Smc <324..>841 CDD:440809 79/364 (22%)
lamb1aNP_775382.1 Laminin_N 31..266 CDD:459653
EGF_Lam 268..320 CDD:238012
Laminin_EGF <353..382 CDD:395007
EGF_Lam 394..452 CDD:238012
EGF_Lam 453..504 CDD:238012
EGF_Lam 505..548 CDD:238012
EGF_Lam 769..814 CDD:214543
Laminin_EGF 817..865 CDD:395007
EGF_Lam 862..907 CDD:238012
Laminin_EGF <934..969 CDD:395007
Laminin_EGF 972..1018 CDD:395007
Laminin_EGF 1024..1078 CDD:395007
Laminin_EGF 1081..1129 CDD:395007
Laminin_EGF 1129..>1168 CDD:395007
Myosin_tail_1 1247..>1756 CDD:460256 128/643 (20%)
cc_LAMB1_C 1712..1784 CDD:411971 17/75 (23%)
Blue background indicates that the domain is not in the aligned region.

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