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Protein Alignment CAH9 and Car5b

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_851832.2	Gene:	Car5b / 56078	MGIID:	1926249	Length:	317	Species:	Mus musculus

Alignment Length:	262	Identity:	77/262 - (29%)
Similarity:	124/262 - (47%)	Gaps:	38/262 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    43 AGKTQSPIAITTSRTTAIHMPAVDMIGYHNLLPYP----LKMINNGHTVSITIPKVNVTEVGEDF 103
            ||..||||.|..  ..:::.|.:..:    .:.|.    |.:.|||::..:.........|
Mouse    60 AGDRQSPINIRW--RDSVYDPGLKPL----TISYDPATCLHIWNNGYSFLVEFEDSTDKSV---- 114

  Fly   104 LPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHIVHRNK-KYATIGEALNHPDG 167
               :.|..|...:.::..|||||..:..||||.::...|..|:|:||.|. |:.:..:|....:|
Mouse   115 ---VEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENG 176

  Fly   168 AAVLGFFFNLDEDEGAGLVTINRHLHLIADA-----NQEATLNV-TFSLSSLIAGVDVDKFYTYK 226
            .||:|.|..|.:.        ::.|..:.|.     :::..:.. :|..|.|:.  ....::||.
Mouse   177 LAVIGVFLKLGKH--------HKELQKLVDTLPSIKHKDTLVEFGSFDPSCLMP--TCPDYWTYS 231

  Fly   227 GSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG----ALVDNFRTLQPVGNRRIFART 287
            |||||||.||:||||:...|:.:...|:.:||.|..|.:|    .:|||||.|||:.||.:.:..
Mouse   232 GSLTTPPLSESVTWIIKKQPVEVDRDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTVRSSF 296

  Fly   288 GH 289
            .|
Mouse   297 RH 298

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.