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Protein Alignment CAH9 and Ca5a

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	283	Identity:	87/283 - (30%)
Similarity:	129/283 - (45%)	Gaps:	57/283 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly    32 QRRWARHHGHCA-------------GKTQSPIAITTSRTTAIHMPAVDMIGYHNLLPYPLK---- 79
            |..:|..|.:||             |..||||.|  ..|.:::.|.:          .||:
  Rat    35 QHSYAEKHSNCARHPLWTGPVSSPGGTQQSPINI--QWTDSVYDPKL----------APLRVSYD 87

  Fly    80 ------MINNGHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVIN 138
                  :.|.|:...:.... :..|.|      |.|..|...:.::..|||||..:..||||:::
  Rat    88 AASCRYLWNTGYFFQVEFDD-SCEESG------ISGGPLGNHYRLKQFHFHWGATDEWGSEHMVD 145

  Fly   139 DIRYTMEMHIVHRNK-KYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEA 202
            ...|..|:|:||.|. ||....:|....:|.||:|.|..|    ||....:.|.:.::.:...:.
  Rat   146 GHAYPAELHLVHWNSMKYENYKKATTGENGLAVIGVFLKL----GAHHEALQRLVDILPEVRHKD 206

  Fly   203 TLNVT---FSLSSLIAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQ 264
            | .||   |..|.|:..  ...::||.|||||||.:|:||||:...||.:||.|:|.||.|..:.
  Rat   207 T-QVTMGPFDPSCLLPA--CRDYWTYPGSLTTPPLAESVTWIVHKMPIEVSPSQLSTFRTLLFSG 268

  Fly   265 DG----ALVDNFRTLQPVGNRRI 283
            .|    .:|:|||.|||:..|.:
  Rat   269 RGEDEEVMVNNFRPLQPLRGRNV 291

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.