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Protein Alignment CAH9 and Ca3

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	271	Identity:	87/271 - (32%)
Similarity:	132/271 - (48%)	Gaps:	28/271 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 FGYSEPN-QRRWARHHGHCAGKTQSPIAITTSRTTAIHMPAVD--MIGYHNLLPYPLK-MINNGH 85
            :||:..| ...|...:....|..||||.:.|....  |.|::.  .:.|.   |...| ::|||.
  Rat     5 WGYASHNGPEHWHELYPIAKGDNQSPIELHTKDIR--HDPSLQPWSVSYD---PGSAKTILNNGK 64

  Fly    86 TVSITIPKVNVTEVGEDFL--PYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHI 148
            |..:         |.:|..  ..:||..|.|.:.:...|.|||..::.||||.::.::|..|:|:
  Rat    65 TCRV---------VFDDTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHL 120

  Fly   149 VHRNKKYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEATLNVTFSLSSL 213
            ||.|.||.|.||||..|||.||:|.|..:..::|...:.::. |..|....:||..| .|..|.|
  Rat   121 VHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKGEFQILLDA-LDKIKTKGKEAPFN-HFDPSCL 183

  Fly   214 IAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG----ALVDNFRT 274
            ...  ...::||.||.|||||.|.:.|:|..:|:.:|..|:::.|.|..:.:.    .||.|:|.
  Rat   184 FPA--CRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFASAENEPPVPLVGNWRP 246

  Fly   275 LQPVGNRRIFA 285
            .||:..|.:.|
  Rat   247 PQPIKGRVVRA 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.