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Protein Alignment CAH9 and Car2

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_062164.1	Gene:	Car2 / 54231	RGDID:	2240	Length:	260	Species:	Rattus norvegicus

Alignment Length:	271	Identity:	101/271 - (37%)
Similarity:	147/271 - (54%)	Gaps:	22/271 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    22 SHVFGYSEPN-QRRWARHHGHCAGKTQSPIAITTSRTTAIHMPAVD--MIGYHNLLPYPLKMINN 83
            ||.:|||:.| ...|.:......|..|||:.|.|.  ||.|.|::.  :|.|..:.  ...::||
  Rat     2 SHHWGYSKSNGPENWHKEFPIANGDRQSPVDIDTG--TAQHDPSLQPLLICYDKVA--SKSIVNN 62

  Fly    84 GHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHI 148
            ||:.::..      :..:|| ..::...|.|.:.:...|||||..:.:||||.:|..:|..|:|:
  Rat    63 GHSFNVEF------DDSQDF-AVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHL 120

  Fly   149 VHRNKKYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEATLNVTFSLSSL 213
            ||.|.||...|:|:.||||.||||.|..:. ....||..|...||.|....:.|.. ..|...||
  Rat   121 VHWNTKYGDFGKAVQHPDGLAVLGIFLKIG-PASQGLQKITEALHSIKTKGKRAAF-ANFDPCSL 183

  Fly   214 IAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG----ALVDNFRT 274
            :.| ::| ::||.|||||||..|.||||:..:||.:|.:|:|.||:|:...:|    .:|||:|.
  Rat   184 LPG-NLD-YWTYPGSLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNSEGEAEELMVDNWRP 246

  Fly   275 LQPVGNRRIFA 285
            .||:.||:|.|
  Rat   247 AQPLKNRKIKA 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.