back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH9 and Car1

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	282	Identity:	82/282 - (29%)
Similarity:	139/282 - (49%)	Gaps:	39/282 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 VSSHVFGYSEPN-QRRWARHHGHCAGKTQSPIAITTSRTTAIHMPAVD--MIGYHNLLPYPLK-M 80
            ::|..:||...| ..:|::.:....|..||||.|.||.  |.|..::.  .:.|:   |...| :
  Rat     1 MASADWGYDSKNGPDQWSKLYPIANGNNQSPIDIKTSE--AKHDSSLKPVSVSYN---PATAKEI 60

  Fly    81 INNGHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTME 145
            :|.||:..:.....:...|       ::|..|...:.:...|||||:.|:.||||.::..:|:.|
  Rat    61 VNVGHSFHVVFDDSSNQSV-------LKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAKYSGE 118

  Fly   146 MHIVHRNK-KYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEATLN---- 205
            :|:||.|. ||::..||::..||.|::|....:.        ..|.:|..:.||.......
  Rat   119 LHLVHWNSAKYSSAAEAISKADGLAIIGVLMKVG--------PANPNLQKVLDALSSVKTKGKRA 175

  Fly   206 --VTFSLSSLI-AGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG- 266
              ..|..|||: :.:|   ::||.||||.||..|:|||::..:.|.:||:|:::.|.|..:.:|
  Rat   176 PFTNFDPSSLLPSSLD---YWTYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGE 237

  Fly   267 ---ALVDNFRTLQPVGNRRIFA 285
               .::.|.|..||:..|.:.|
  Rat   238 PAVPVLSNHRPPQPLKGRTVRA 259

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.