back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CAH9 and Ca5b

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_001005551.1	Gene:	Ca5b / 302669	RGDID:	1549783	Length:	317	Species:	Rattus norvegicus

Alignment Length:	276	Identity:	80/276 - (28%)
Similarity:	129/276 - (46%)	Gaps:	41/276 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    43 AGKTQSPIAITTSRTTAIHMPAVDMIGYHNLLPYP----LKMINNGHTVSITIPKVNVTEVGEDF 103
            ||..||||.|..  ..:::.|.:..:    .:.|.    |.:.|||::..:.........|
  Rat    60 AGDRQSPINIRW--RDSVYDPGLKPL----TISYDPATCLHIWNNGYSFLVEFEDTTDKSV---- 114

  Fly   104 LPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHIVHRNK-KYATIGEALNHPDG 167
               |.|..|...:.::..|||||..:..||||.::...|..|:|:||.|. |:.:..:|....:|
  Rat   115 ---IEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENG 176

  Fly   168 AAVLGFFFNLDEDEGAGLVTINRHLHLIADA-----NQEATLNV-TFSLSSLIAGVDVDKFYTYK 226
            .||:|.|..|.:.        ::.|..:.|.     :::..:.. :|..|.|:.  ....::||.
  Rat   177 LAVIGVFLKLGKH--------HKELQKLVDTLPSIKHKDTLVKFGSFDPSCLMP--TCPDYWTYS 231

  Fly   227 GSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG----ALVDNFRTLQPVGNRRIFART 287
            |||||||.||:||||:...|:.:...|:.:||.|..|.:|    .:|||||.|||:.||.:   .
  Rat   232 GSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTV---R 293

  Fly   288 GHVRHTSIATLKHEGE 303
            ...||..:..::.:.|
  Rat   294 SSFRHDYVLNIQVKPE 309

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.