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Protein Alignment CAH9 and Ca4

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	286	Identity:	91/286 - (31%)
Similarity:	138/286 - (48%)	Gaps:	36/286 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    29 EPNQ-----RRWARHHGHCAGKTQSPIAITTSRTTAIHMPAV---DMIGYHNLLPYPLKMINNGH 85
            |||.     .:|.   |.|....||||.|.||:|..  .|::   ..:||.....:.:|  ||.|
  Rat    30 EPNSHCSGPEQWT---GDCKKNQQSPINIVTSKTKL--NPSLTPFTFVGYDQKKKWEVK--NNQH 87

  Fly    86 TVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEMHIVH 150
            :|.:::        |||.  ||.|..||.:::...||.||.:::|:||||.|:...:.||||:||
  Rat    88 SVEMSL--------GEDI--YIFGGDLPTQYKAIQLHLHWSEESNKGSEHSIDGKHFAMEMHVVH 142

  Fly   151 RNKKYATIGEALNHPDG---AAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEATLNVTFSLSS 212
               |..|.|:.:...|.   .|||.|...:..:...|...:...|..::.....:|::.:.....
  Rat   143 ---KKMTTGDKVQDSDSKDKIAVLAFMVEVGNEVNEGFQPLVEALSRLSKPFTNSTVSESCLQDM 204

  Fly   213 LIAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRF-RQLSDTQDGAL--VDNFRT 274
            |.....:..::.|:||||||.|.|.|.|.:|.:||.|...|...| ::|...|:..|  .||.|.
  Rat   205 LPEKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKLYYDQEQKLNMKDNVRP 269

  Fly   275 LQPVGNRRIFA--RTGHVRHTSIATL 298
            |||:|||::|.  .:|.:....:.||
  Rat   270 LQPLGNRQVFRSHASGRLLSLPLPTL 295

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.