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Protein Alignment CAH9 and Car5a

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_031634.2	Gene:	Car5a / 12352	MGIID:	101946	Length:	299	Species:	Mus musculus

Alignment Length:	306	Identity:	86/306 - (28%)
Similarity:	135/306 - (44%)	Gaps:	71/306 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly    19 AVSSHVFGYSEPNQRRW------ARHHGHCA-------------GKTQSPIAITTSRTTAIHMPA 64
            |:..||........:||      |..|.:||             |..||||.|...  .:::.|.
Mouse    11 AILRHVGLLCATGPQRWRFQHSCAEEHSNCARHPLWTGPVSSAEGTRQSPINIQWK--DSVYDPQ 73

  Fly    65 VDMIGYHNLLPYPLK----------MINNGHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVE 119
            :          .||:          :.|.|:..     :|...:..||  ..|.|..|...:.::
Mouse    74 L----------APLRVSYDAASCRYLWNTGYFF-----QVEFDDSCED--SGISGGPLGNHYRLK 121

  Fly   120 GLHFHWGDKNNRGSEHVINDIRYTMEMHIVH------RNKKYATIGEALNHPDGAAVLGFFFNLD 178
            ..|||||..:..||||.::...|..|:|:||      .|.|.|::||     :|.||:|.|..|
Mouse   122 QFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGE-----NGLAVIGVFLKL- 180

  Fly   179 EDEGAGLVTINRHLHLIADANQEATLNV--TFSLSSLIAGVDVDKFYTYKGSLTTPPCSEAVTWI 241
               ||....:.:.:.::.:...:.|...  .|..|.|:..  ...::||.|||||||.:|:||||
Mouse   181 ---GAHHQALQKLVDVLPEVRHKDTQVAMGPFDPSCLLPA--CRDYWTYPGSLTTPPLAESVTWI 240

  Fly   242 LFPDPIPISPKQISRFRQL----SDTQDGALVDNFRTLQPVGNRRI 283
            :...|:.:||.|:|.||.|    ...::..:|:|:|.|||:.:|::
Mouse   241 VQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQPLRDRKL 286

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.