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Protein Alignment CAH9 and Car2

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_001344263.1	Gene:	Car2 / 12349	MGIID:	88269	Length:	260	Species:	Mus musculus

Alignment Length:	273	Identity:	100/273 - (36%)
Similarity:	145/273 - (53%)	Gaps:	26/273 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly    22 SHVFGYSEPN-QRRWARHHGHCAGKTQSPIAITTSRTTAIHMPAVDMIGYHNLLPY----PLKMI 81
            ||.:|||:.| ...|.:......|..|||:.|.|:  ||.|.||:..:    |:.|    ...::
Mouse     2 SHHWGYSKHNGPENWHKDFPIANGDRQSPVDIDTA--TAQHDPALQPL----LISYDKAASKSIV 60

  Fly    82 NNGHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTMEM 146
            ||||:.::.........|       ::|..|...:.:...|||||..:.:||||.:|..:|..|:
Mouse    61 NNGHSFNVEFDDSQDNAV-------LKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAEL 118

  Fly   147 HIVHRNKKYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADANQEATLNVTFSLS 211
            |:||.|.||...|:|:..|||.||||.|..:. ....||..:...||.|....:.|.. ..|...
Mouse   119 HLVHWNTKYGDFGKAVQQPDGLAVLGIFLKIG-PASQGLQKVLEALHSIKTKGKRAAF-ANFDPC 181

  Fly   212 SLIAGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG----ALVDNF 272
            ||:.| ::| ::||.|||||||..|.||||:..:||.:|.:|:|.||.|:..::|    |:|||:
Mouse   182 SLLPG-NLD-YWTYPGSLTTPPLLECVTWIVLREPITVSSEQMSHFRTLNFNEEGDAEEAMVDNW 244

  Fly   273 RTLQPVGNRRIFA 285
            |..||:.||:|.|
Mouse   245 RPAQPLKNRKIKA 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.