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Protein Alignment CAH9 and Car1

DIOPT Version :9

Sequence 1:	NP_651535.1	Gene:	CAH9 / 43264	FlyBaseID:	FBgn0039486	Length:	311	Species:	Drosophila melanogaster
Sequence 2:	NP_001077426.1	Gene:	Car1 / 12346	MGIID:	88268	Length:	261	Species:	Mus musculus

Alignment Length:	282	Identity:	89/282 - (31%)
Similarity:	141/282 - (50%)	Gaps:	39/282 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    20 VSSHVFGY-SEPNQRRWARHHGHCAGKTQSPIAITTSRTTAIHMPAVD--MIGYHNLLPYPLK-M 80
            ::|..:|| ||....:|::.:....|..||||.|.||.  |.|..::.  .|.|:   |...| :
Mouse     1 MASADWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSE--ANHDSSLKPLSISYN---PATAKEI 60

  Fly    81 INNGHTVSITIPKVNVTEVGEDFLPYIRGAKLPGEFEVEGLHFHWGDKNNRGSEHVINDIRYTME 145
            :|.||:..:.....:...|       ::|..|...:.:...|||||:.|:.||||.::..||:.|
Mouse    61 VNVGHSFHVIFDDSSNQSV-------LKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGE 118

  Fly   146 MHIVHRNK-KYATIGEALNHPDGAAVLGFFFNLDEDEGAGLVTINRHLHLIADA-NQEATLN--- 205
            :|:||.|. ||::..||::..||.|:||....:.        ..|..|..:.|| |...|..
Mouse   119 LHLVHWNSAKYSSASEAISKADGLAILGVLMKVG--------PANPSLQKVLDALNSVKTKGKRA 175

  Fly   206 --VTFSLSSLI-AGVDVDKFYTYKGSLTTPPCSEAVTWILFPDPIPISPKQISRFRQLSDTQDG- 266
              ..|..|||: :.:|   ::||.||||.||..|:|||::..|.|.:||:|:::.|.|..:.:|
Mouse   176 PFTNFDPSSLLPSSLD---YWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGE 237

  Fly   267 ---ALVDNFRTLQPVGNRRIFA 285
               .::.|.|..||:..|.:.|
Mouse   238 PAVPVLSNHRPPQPLKGRTVRA 259

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.