DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and LOC561565

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:XP_073808436.1 Gene:LOC561565 / 561565 -ID:- Length:468 Species:Danio rerio


Alignment Length:397 Identity:125/397 - (31%)
Similarity:191/397 - (48%) Gaps:73/397 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NITVMMNFSCDDYDLLSEDMWSSAYFKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYF 143
            |||.:        |....:.:.||.| |:.|:|   |||..::|||.||:||..:..||||||.|
Zfish    40 NITYV--------DFYLHEPFVSAIF-IVSYLL---IFIVCMMGNGVVCFIVLRSKNMRTVTNLF 92

  Fly   144 IASLAIGDILMSFFCVPSSFISLFILNYWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRY--- 205
            |.:|||.|:|:..||:|::.:. .|:..||||..:|......|.:||..|.:|||||::||:   
Zfish    93 ILNLAISDLLVGIFCMPTTLVD-NIITGWPFGSLVCKLSGMVQGISVSASVFTLVAIAVDRWDGQ 156

  Fly   206 -----IAIMWPLKPRITKRYATFIIAGVWFIALATALPIPIV------SGLDIPMSPWHTKCEKY 259
                 .|::| ...::|...:|.||..:|.:|::...|..::      ..:.|.:|..:|....|
Zfish   157 IKGYQRALLW-ASLKLTISTSTLIIIIIWVLAISIMCPSGVMLQVTKEHRVSILLSDGNTTQPFY 220

  Fly   260 ICREMWPSRTQEYYYTLSLFALQFVVPLGVLIFTYARITIRVWAKRPPG---------------- 308
            .|||.||::.....||..|||..::.||.:::..||||.|.::....|.                
Zfish   221 WCRENWPNQEMRKIYTTVLFANIYLAPLTLIVIMYARIGITLFKTSMPAPVSQVGTSGSGSGSGK 285

  Fly   309 EAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQLLLND----EEFAHWDPLPYVWFAFH 369
            :......|.::|.|::::||:|.|.::|...|||...| ::|:|    .|..|.....|.:...|
Zfish   286 QCRYESRQLVSRKKKRVIKMLLVVALLFILSWLPLWAL-MMLSDYASLSERQHRVINIYFYPLAH 349

  Fly   370 WLAMSHCCYNPIIYCYMNARFRSGF-----VQLMHRMPGLRRWCCLRSVGDRMNATSGEMTTKYH 429
            |||..:...|||||.:.|..||.||     :||           |        :..||...|..|
Zfish   350 WLAFCNSSVNPIIYGFFNENFRKGFKAAFKLQL-----------C--------SGHSGNRRTYSH 395

  Fly   430 RHVGDAL 436
            |..|:|:
Zfish   396 RLQGNAV 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 106/321 (33%)
TM helix 1 107..133 CDD:320514 12/25 (48%)
TM helix 2 140..165 CDD:320514 12/24 (50%)
TM helix 3 179..209 CDD:320514 13/37 (35%)
TM helix 4 220..241 CDD:320514 6/20 (30%)
TM helix 5 271..300 CDD:320514 11/28 (39%)
TM helix 6 320..350 CDD:320514 11/29 (38%)
TM helix 7 362..387 CDD:320514 10/24 (42%)
LOC561565XP_073808436.1 None

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