DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and hcrtr2

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_001073337.1 Gene:hcrtr2 / 561260 ZFINID:ZDB-GENE-070228-3 Length:424 Species:Danio rerio


Alignment Length:358 Identity:100/358 - (27%)
Similarity:169/358 - (47%) Gaps:52/358 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TVMMNFSCDDYDLLSEDMWSS----AYFKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTN 141
            |:..:.:.::.|.|.:.:|..    ..::.::...||.:|:.:|:||..||:.|:....||||||
Zfish    26 TISHSHAENEDDELLKYIWREYLHPKQYEWVLIAGYILVFLVSLVGNTLVCFAVWKNHHMRTVTN 90

  Fly   142 YFIASLAIGDILMSFFCVPSSFISLFILNYWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYI 206
            |||.:|:..|||::..|:|:|.: :.|...|.||..||..:.|.|.:||.||..||..|:.||:.
Zfish    91 YFIVNLSFADILVTITCLPASLV-VDITETWFFGQTLCKILPYLQTISVSVSVLTLSCIAQDRWY 154

  Fly   207 AIMWPLKPRITKRYATFIIAGVWFIALATALPIPIVSGLDIPMSPWHTKCEKY-ICREMWPSRTQ 270
            ||..|||.:.|.:.|...|..:|.::....:|..:|......|.....|...: :|.|.||....
Zfish   155 AICHPLKFKSTAKRARKSIVLIWLVSCIMMIPQAVVMESSSLMPELTNKTSLFTVCDEQWPDEIY 219

  Fly   271 EYYYTLSLFALQFVVPLGVLIFTYARITIRVWAKRPPGEAE------------------------ 311
            ...|....|.:.:..||.:::..|.:|..::|.::.||.:.                        
Zfish   220 PKVYHTCFFIVTYFAPLCLMVLAYIQICHKLWCQQIPGSSSVLQRQWKSLQCSAHAVGSGESVKV 284

  Fly   312 ----TNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQLLL----------NDEEFAHWDPLP 362
                .:.:.:..:::||..:|::.|:.||..|:||.:||.::.          |.|..       
Zfish   285 RTSTVSAEAKQVKARRKTARMLMVVLFVFALCYLPISILNIMKRVFGAFKNTGNRETV------- 342

  Fly   363 YVWFAF-HWLAMSHCCYNPIIYCYMNARFRSGF 394
            |.||.| |||..::...|||||.:::.:||..|
Zfish   343 YAWFTFSHWLIYANSAANPIIYNFLSGKFREEF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 95/327 (29%)
TM helix 1 107..133 CDD:320514 9/25 (36%)
TM helix 2 140..165 CDD:320514 12/24 (50%)
TM helix 3 179..209 CDD:320514 13/29 (45%)
TM helix 4 220..241 CDD:320514 4/20 (20%)
TM helix 5 271..300 CDD:320514 6/28 (21%)
TM helix 6 320..350 CDD:320514 11/29 (38%)
TM helix 7 362..387 CDD:320514 12/25 (48%)
hcrtr2NP_001073337.1 7tmA_OXR 55..375 CDD:320336 95/327 (29%)
TM helix 1 56..82 CDD:320336 9/25 (36%)
TM helix 2 89..115 CDD:320336 12/26 (46%)
TM helix 3 127..157 CDD:320336 13/29 (45%)
TM helix 4 168..189 CDD:320336 4/20 (20%)
TM helix 5 220..249 CDD:320336 6/28 (21%)
TM helix 6 297..327 CDD:320336 11/29 (38%)
TM helix 7 343..368 CDD:320336 12/24 (50%)
Orexin_rec2 390..>424 CDD:427531
Blue background indicates that the domain is not in the aligned region.

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