DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and sNPF-R

DIOPT Version :9

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster


Alignment Length:602 Identity:148/602 - (24%)
Similarity:239/602 - (39%) Gaps:157/602 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 NTTALPADDEGSNYGYGSTTTLSGLQFETYNITVMMNFSCDDYDLLSEDMWSSAYFKIIVYMLYI 113
            :|:.||.... :|:...|..|.|         .::.:.:..|.| .|..:..:.:.:|..|:||.
  Fly    18 STSQLPLVST-TNWSLTSPGTTS---------AILADVAASDED-RSGGIIHNQFVQIFFYVLYA 71

  Fly   114 PIFIFALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCVPSSFISLF-ILNYWPFGLA 177
            .:|:..:.||..|||:|.....|:||||.||.:||:.|||:....||  |..|: .:..|.||.:
  Fly    72 TVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVP--FTPLYTFMGRWAFGRS 134

  Fly   178 LCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIALATALPI--- 239
            |||.|:::|..|:.:|..||.:|:||||..|::|..||:.......||..:|.|||...:|.   
  Fly   135 LCHLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATVPYGMY 199

  Fly   240 -----PIVSG--------------------------LDIPMSPWHTKCEKYI------------- 260
                 .:|:|                          ::.|.|...|:....:             
  Fly   200 MKMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQVMTAGSTGPEMPYV 264

  Fly   261 ---CREMWPSRTQEYYYTLSLFALQFVVPLGVLIFTYARITIRV--WAKRPPGEAETNRDQRMAR 320
               |.|.|||......:......||||:|..::...|..|::::  .|:..||...:.|::....
  Fly   265 RVYCEENWPSEQYRKVFGAITTTLQFVLPFFIISICYVWISVKLNQRARAKPGSKSSRREEADRD 329

  Fly   321 SKRKMVKMMLTVVIVFTCCWLPFNILQLLLN-DEEFAHWDPLPYVWFAFHWLAMSHCCYNPIIYC 384
            .|::..:|::.:|.||...|||.|::.:..: |::...|......:|..|.:|||..||||.:|.
  Fly   330 RKKRTNRMLIAMVAVFGLSWLPINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYA 394

  Fly   385 YMNARFRSGFVQLMHRMPGLRRWCCLRSVGDRMNATSG----EMTT---KYHRHVGD-------- 434
            ::|..||..|   .|.:|     |...|..:.:|.|.|    :..|   :.|...||        
  Fly   395 WLNENFRKEF---KHVLP-----CFNPSNNNIINITRGYNRSDRNTCGPRLHHGKGDGGMGGGSL 451

  Fly   435 -------------ALFRKPKICI-------RNGSSTSS-------------QSNEH-IHHL---- 461
                         ....|.|:.|       .||:...|             ...:| :|.|    
  Fly   452 DADDQDENGITQETCLPKEKLLIIPREPTYGNGTGAVSPILSGRGINAALVHGGDHQMHQLQPSH 516

  Fly   462 HQR---------------------SSKATSDIFASEPIIVRRDVTTAVAVISKNKT---DSPV-- 500
            ||:                     ..:.|.::..||...|..|.||.::::..:.:   ||.|  
  Fly   517 HQQVELTRRIRRRTDETDGDYLDSGDEQTVEVRFSETPFVSTDNTTGISILETSTSHCQDSDVMV 581

  Fly   501 ---RRSGSSGGTEANIR 514
               ...|:.||.|...|
  Fly   582 ELGEAIGAGGGAELGRR 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tm_4 113..>234 CDD:304433 49/121 (40%)
7tm_1 122..383 CDD:278431 91/314 (29%)
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 49/122 (40%)
7tm_1 80..393 CDD:278431 91/314 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5469
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102619
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.760

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