DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and Tacr1

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_036799.1 Gene:Tacr1 / 24807 RGDID:3811 Length:407 Species:Rattus norvegicus


Alignment Length:368 Identity:119/368 - (32%)
Similarity:176/368 - (47%) Gaps:71/368 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 STTTLSGLQF--ETYNITVMMNFSCDDYDLLSEDMWSSAYFKIIVYMLYIPIFIFALIGNGTVCY 128
            ||.|....||  .|:.|.                :|::||..|:|         .:::||..|.:
  Rat    16 STNTSESNQFVQPTWQIV----------------LWAAAYTVIVV---------TSVVGNVVVIW 55

  Fly   129 IVYSTPRMRTVTNYFIASLAIGDILMSFFCVPSSFISLFILNYWPFGLALCHFVNYSQAVSVLVS 193
            |:.:..|||||||||:.:||..:..|:.|....:| :..:.|.|.:||..|.|.|:....::..|
  Rat    56 IILAHKRMRTVTNYFLVNLAFAEACMAAFNTVVNF-TYAVHNVWYYGLFYCKFHNFFPIAALFAS 119

  Fly   194 AYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIALATALPIPIVSGLDIPMSPWHTKCEK 258
            .|::.|::.|||:||:.||:||::......:|..:|.:||..|.|....|..:       |...:
  Rat   120 IYSMTAVAFDRYMAIIHPLQPRLSATATKVVIFVIWVLALLLAFPQGYYSTTE-------TMPSR 177

  Fly   259 YICREMW---PSRTQEYYYTLSLFALQFVVPLGVLIFTYARITIRVWAKRPPGEAETNRDQRMAR 320
            .:|...|   |:||.|..|.:.:..|.:.:||.|:.:.|..:.|.:||...||:: ::|......
  Rat   178 VVCMIEWPEHPNRTYEKAYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS-SDRYHEQVS 241

  Fly   321 SKRKMVKMMLTVVIVFTCCWLPFNILQLLLNDEEFAHWDPLPY-------------VWFAFHWLA 372
            :|||:||||:.||..|..|||||::..|            |||             |:.|..|||
  Rat   242 AKRKVVKMMIVVVCTFAICWLPFHVFFL------------LPYINPDLYLKKFIQQVYLASMWLA 294

  Fly   373 MSHCCYNPIIYCYMNARFRSGFVQLMHRMPGLRRWCCLRSVGD 415
            ||...|||||||.:|.|||.||....       |.|...|.||
  Rat   295 MSSTMYNPIIYCCLNDRFRLGFKHAF-------RCCPFISAGD 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 102/303 (34%)
TM helix 1 107..133 CDD:320514 5/25 (20%)
TM helix 2 140..165 CDD:320514 9/24 (38%)
TM helix 3 179..209 CDD:320514 10/29 (34%)
TM helix 4 220..241 CDD:320514 6/20 (30%)
TM helix 5 271..300 CDD:320514 7/28 (25%)
TM helix 6 320..350 CDD:320514 16/29 (55%)
TM helix 7 362..387 CDD:320514 16/37 (43%)
Tacr1NP_036799.1 7tm_GPCRs 33..316 CDD:475119 105/328 (32%)
TM helix 1 35..59 CDD:410628 9/32 (28%)
TM helix 2 68..90 CDD:410628 7/21 (33%)
TM helix 3 106..128 CDD:410628 5/21 (24%)
TM helix 4 149..165 CDD:410628 5/15 (33%)
TM helix 5 194..217 CDD:410628 5/22 (23%)
TM helix 6 247..269 CDD:410628 12/21 (57%)
TM helix 7 284..309 CDD:410628 14/24 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..407
Blue background indicates that the domain is not in the aligned region.

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