DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and tkr-2

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_500930.1 Gene:tkr-2 / 183595 WormBaseID:WBGene00016761 Length:391 Species:Caenorhabditis elegans


Alignment Length:314 Identity:96/314 - (30%)
Similarity:154/314 - (49%) Gaps:27/314 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 IVYMLYIPIFIF-ALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCVPSSFISLFILN 170
            |.|.:...:.|| ||:||.||.:|:....:||:||||::.:||:.|..:|.|....|    :..|
 Worm    62 IFYGILFTLTIFLALMGNFTVMWIILYHRQMRSVTNYYLFNLAVADASISVFNTGFS----WSYN 122

  Fly   171 Y---WPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIA 232
            |   |.||...|...|......:..|.:|::.:||:||.||:.|||.|..:|....||..:||:|
 Worm   123 YYYVWKFGSFYCRINNLMGITPICASVFTMIVMSIERYYAIIHPLKKRPGRRSTVTIIIMIWFMA 187

  Fly   233 LATALPIPIVSGLDI-PMSPWHTKCEKYIC-REMWPSRTQE---YYYTLSLFALQFVVPLGVLIF 292
            ....:|..:.|.:|: .....:|..|..:| .:.:|...:.   ..|...|..:|:::||.:|..
 Worm   188 FLFGVPAFLASKVDVYYFYDGYTLYENPLCLADNYPGGNESLLGQVYNNGLITVQYILPLCILSA 252

  Fly   293 TYARITIRVWAKRPPGEAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQLLLNDEEFAH 357
            .|.|:.:.:...:..|:.   |..:...:|:|...|:..||.:|...|.|:|...|.|:..|   
 Worm   253 AYYRVGVELRKDKTVGDV---RHAKSVAAKKKASIMLAVVVFIFMIVWFPYNAYYLTLHLVE--- 311

  Fly   358 WDPLP------YVWFAFHWLAMSHCCYNPIIYCYMNARFRSGFVQLMHRMPGLR 405
              |:.      |::...:||.||...:||:||.:||.|||.||......:|.:|
 Worm   312 --PIGNKMLSLYIYINIYWLGMSSTVFNPVIYYFMNKRFRVGFHHAFRWLPFVR 363

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 92/301 (31%)
TM helix 1 107..133 CDD:320514 11/26 (42%)
TM helix 2 140..165 CDD:320514 9/24 (38%)
TM helix 3 179..209 CDD:320514 9/29 (31%)
TM helix 4 220..241 CDD:320514 6/20 (30%)
TM helix 5 271..300 CDD:320514 8/31 (26%)
TM helix 6 320..350 CDD:320514 10/29 (34%)
TM helix 7 362..387 CDD:320514 9/30 (30%)
tkr-2NP_500930.1 7tmA_TACR 62..352 CDD:320512 92/301 (31%)
TM helix 1 63..89 CDD:320512 10/25 (40%)
TM helix 2 96..122 CDD:320512 9/29 (31%)
TM helix 3 134..164 CDD:320512 9/29 (31%)
TM helix 4 175..196 CDD:320512 6/20 (30%)
TM helix 5 231..260 CDD:320512 8/28 (29%)
TM helix 6 277..307 CDD:320512 10/29 (34%)
TM helix 7 320..345 CDD:320512 9/24 (38%)

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