DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and npr-28

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_509416.2 Gene:npr-28 / 181089 WormBaseID:WBGene00018886 Length:518 Species:Caenorhabditis elegans


Alignment Length:557 Identity:113/557 - (20%)
Similarity:206/557 - (36%) Gaps:145/557 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 STTTLSGLQFETYNITVMMNFSCDDYDLLSEDMWSSAYFKII-VYMLYIPIFIFALIGNGTVCYI 129
            ||.|:|.....|   ||....|......|::.|  ...|:|: |.:||   ...|:.|.|..|::
 Worm     2 STMTISSTSILT---TVSTTTSSTIVPSLNDPM--EIQFEIMFVMVLY---SCLAVTGVGGNCWV 58

  Fly   130 VY---------STPRMR---TVTN----YFIASLAIGDILMSFFCVPSSFISLFILNYWPFGLAL 178
            :.         |:.|.|   ||..    .::..|::.| |.|...||.....::: |::||||..
 Worm    59 LIKVIKQLSGCSSNRSRPYKTVVQSSAYVYLIILSVVD-LFSLIPVPMIVTDVYV-NHFPFGLWA 121

  Fly   179 CHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWP----LKPRITKRYATFIIAGVWFIALATALPI 239
            |....:.:|::..:|...|.|:|:|||||:..|    |:   |.:::..::|..:.::|...:|:
 Worm   122 CKLSYFCEAINKSLSPMVLTALSVDRYIAVCHPTLYWLR---TTKFSLGVLAVCFSVSLIFIIPV 183

  Fly   240 PIVSGLDIPMSPWHTKCEKYICREMWPSRTQE--------------YYYTLSLFALQFVVPLGVL 290
                             .|....::....|.|              |.:..:...:.::|||.::
 Worm   184 -----------------TKKATMQVMKDNTDEEIIKCAFDHGDSASYVFDTAQAIVCYLVPLFII 231

  Fly   291 IFTYARITIRVWAKRPPGEAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQL------- 348
            ...|..|..:::..    ...:...::.:.|..::||..:.||..:..||.|:..:::       
 Worm   232 CAVYLAILHKLFIH----TRFSTVGKKTSISLGRVVKCSVMVVAFYFICWTPYWTMRIHYLVTRF 292

  Fly   349 ----------LLND------EEFAHWDPLPYVW----------------FAFHWLAMSHCCYNPI 381
                      ::::      ||........|.:                :..|.|..:...:|.:
 Worm   293 IETNSDGNSTVIDEVVAAVAEEVQDGIETSYFFGLISKKRMHNIEIALIYILHSLTYAQSAFNWL 357

  Fly   382 IYCYMNARFRSGFVQLMHRMPGLRRWCCLRSVGDRMNATSGEMTT-----KYHRHVG-------- 433
            .|.::|...||.    ..|..|.|. ....||.|..||||...|:     |..:.:|        
 Worm   358 FYSFLNRNLRSN----NGRGNGTRS-AANTSVFDNGNATSTVNTSLTPIWKNIQQMGSHIKTAGL 417

  Fly   434 ---DALFRKPKICIRNGSSTSSQSNEHIH----HLHQRSSKAT-----SDIFASEPIIVRRDVTT 486
               .||.:|..  .:..|...|:|..::.    |:.:.||:.|     .||.....:|.|::.:.
 Worm   418 DTRSALMKKSP--FKGKSKIQSRSAAYLDCSSAHMLRPSSENTLSSSLLDIPRRPSLIPRQEPSL 480

  Fly   487 AVAVISKNKTDSP-----VRRSGSSGGTEANIRSTEF 518
            ....:|......|     ..:..||.|..:...|.|:
 Worm   481 VGKALSFTNIPQPQYQRIEPKEESSHGAVSESSSVEW 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 68/361 (19%)
TM helix 1 107..133 CDD:320514 7/35 (20%)
TM helix 2 140..165 CDD:320514 6/28 (21%)
TM helix 3 179..209 CDD:320514 11/29 (38%)
TM helix 4 220..241 CDD:320514 3/20 (15%)
TM helix 5 271..300 CDD:320514 7/42 (17%)
TM helix 6 320..350 CDD:320514 8/46 (17%)
TM helix 7 362..387 CDD:320514 5/40 (13%)
npr-28NP_509416.2 7tm_classA_rhodopsin-like 41..363 CDD:410626 63/350 (18%)
TM helix 1 41..72 CDD:410626 7/33 (21%)
TM helix 2 85..110 CDD:410626 6/25 (24%)
TM helix 3 122..152 CDD:410626 11/29 (38%)
TM helix 4 164..183 CDD:410626 2/18 (11%)
TM helix 5 212..237 CDD:410626 5/24 (21%)
TM helix 6 257..287 CDD:410626 8/29 (28%)
TM helix 7 338..363 CDD:410626 4/24 (17%)

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