DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and Sstr3

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:NP_598206.1 Gene:Sstr3 / 171044 RGDID:620308 Length:428 Species:Rattus norvegicus


Alignment Length:389 Identity:104/389 - (26%)
Similarity:171/389 - (43%) Gaps:94/389 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DPASLIYNTTALPADDEGSNYGYGSTTTLSGLQFETYNITVMMNFSCDDYDLLSEDMWSSAYFKI 106
            ||.:.   ::|.|.|....|...|  |:|:||                            |...|
  Rat    15 DPGNA---SSAWPLDTSLGNASAG--TSLAGL----------------------------AVSGI 46

  Fly   107 IVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCVPSSFISL-FILN 170
            ::.::|:.:.:..|:||..|.|:|.......:||:.:|.:||:.|.|   |.:...|::. ..|:
  Rat    47 LISLVYLVVCVVGLLGNSLVIYVVLRHTSSPSVTSVYILNLALADEL---FMLGLPFLAAQNALS 108

  Fly   171 YWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPR--ITKRYATFIIAGVWFIAL 233
            |||||..:|..|.....::...|.:.|..:|:|||:|::.|.:..  .|...|..:.|.||..:.
  Rat   109 YWPFGSLMCRLVMAVDGINQFTSIFCLTVMSVDRYLAVVHPTRSARWRTAPVARMVSAAVWVASA 173

  Fly   234 ATALPIPIVSGLDIPMSPWHTKCEKYICREMWPS-----RTQEYYYTLSLFALQFVVPLGVLIFT 293
            ...||:.:.||:...||         .|...||.     ||....||.   ||.|..||.|:...
  Rat   174 VVVLPVVVFSGVPRGMS---------TCHMQWPEPAAAWRTAFIIYTA---ALGFFGPLLVICLC 226

  Fly   294 YARITIRV-------------WAKRPPGEAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPF-- 343
            |..|.::|             |.:.|       ..||..||:|::.:|::.||.:|..||:||  
  Rat   227 YLLIVVKVRSTTRRVRAPSCQWVQAP-------ACQRRRRSERRVTRMVVAVVALFVLCWMPFYL 284

  Fly   344 -NILQLLLNDEEFAHWDPLPY--VWFAFHWLAM----SHCCYNPIIYCYMNARFRSGFVQLMHR 400
             ||:.::.         |||.  .:|..::|.:    ::.|.|||:|.:::.||:.||.:::.|
  Rat   285 LNIVNVVC---------PLPEEPAFFGLYFLVVALPYANSCANPILYGFLSYRFKQGFRRILLR 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 89/317 (28%)
TM helix 1 107..133 CDD:320514 7/25 (28%)
TM helix 2 140..165 CDD:320514 8/24 (33%)
TM helix 3 179..209 CDD:320514 9/29 (31%)
TM helix 4 220..241 CDD:320514 6/20 (30%)
TM helix 5 271..300 CDD:320514 10/28 (36%)
TM helix 6 320..350 CDD:320514 13/32 (41%)
TM helix 7 362..387 CDD:320514 8/30 (27%)
Sstr3NP_598206.1 7tm_GPCRs 46..333 CDD:475119 89/317 (28%)
TM helix 1 48..72 CDD:410628 7/23 (30%)
TM helix 2 81..102 CDD:410628 7/23 (30%)
TM helix 3 118..140 CDD:410628 3/21 (14%)
TM helix 4 163..179 CDD:410628 4/15 (27%)
TM helix 5 205..228 CDD:410628 9/25 (36%)
TM helix 6 265..287 CDD:410628 8/21 (38%)
TM helix 7 301..326 CDD:410628 7/24 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 343..428
Blue background indicates that the domain is not in the aligned region.

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