DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and prlhr

DIOPT Version :10

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:XP_002940396.1 Gene:prlhr / 100497660 XenbaseID:XB-GENE-994391 Length:343 Species:Xenopus tropicalis


Alignment Length:301 Identity:88/301 - (29%)
Similarity:153/301 - (50%) Gaps:29/301 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 FKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCVPSSFISLFI 168
            :|.::...|..:....:.||..:.|::..|.:|..|||:.:.:||..|:||...|||.:...:|.
 Frog    33 YKALIIPCYSLVVFTGIFGNYLLIYVICRTKKMHNVTNFLVGNLAFSDMLMCATCVPLTLAYVFE 97

  Fly   169 LNYWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIAL 233
            ...|.||..||:||...|.|:|.||.:||..|::|||.|.::||:.|:|.....:|:||:|.::.
 Frog    98 PRGWVFGHFLCYFVFLMQPVTVYVSVFTLTVIAVDRYHATVYPLRRRLTIPTCAYILAGIWLLSC 162

  Fly   234 ATALP-IPIVSGLDIPMSPWHTKCEKYICREMW-PSRTQEYYYTLSLFALQFVVPLGVLIFTYAR 296
            ..|.| :.....::.|      :.:..||.|.| ....:...|..|...|.:.:|..::..:|.|
 Frog   163 LMAAPALAHTYHVEFP------QLDFSICEEFWFGMEKKRLAYAYSTLILTYALPFIIIALSYLR 221

  Fly   297 ITIRVWAKRPPG-----EAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQLL------L 350
            |::::..:..||     :||.:|.:|     :|..::::.||..|..||||.:|..::      |
 Frog   222 ISVKLKNRVVPGNITNVQAEWDRARR-----KKTFRLLVLVVGAFGMCWLPLHIFNIMKDIDIHL 281

  Fly   351 NDEEFAHWDPLPYVWFAFHWLAMSHCCYNPIIYCYMNARFR 391
            .|:::.:     .|....|||||...|.|.::|.:::..||
 Frog   282 IDKQYFN-----LVQLLCHWLAMMSACTNSLLYAWLHDSFR 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tmA_PR4-like 106..394 CDD:320514 87/299 (29%)
TM helix 1 107..133 CDD:320514 4/25 (16%)
TM helix 2 140..165 CDD:320514 10/24 (42%)
TM helix 3 179..209 CDD:320514 15/29 (52%)
TM helix 4 220..241 CDD:320514 6/21 (29%)
TM helix 5 271..300 CDD:320514 7/28 (25%)
TM helix 6 320..350 CDD:320514 9/35 (26%)
TM helix 7 362..387 CDD:320514 9/24 (38%)
prlhrXP_002940396.1 7tmA_PrRP_R 35..320 CDD:320516 87/299 (29%)
TM helix 1 36..62 CDD:320516 4/25 (16%)
TM helix 2 69..94 CDD:320516 10/24 (42%)
TM helix 3 108..138 CDD:320516 15/29 (52%)
TM helix 4 149..170 CDD:320516 6/20 (30%)
TM helix 5 196..225 CDD:320516 7/28 (25%)
TM helix 6 245..275 CDD:320516 10/34 (29%)
TM helix 7 288..313 CDD:320516 9/29 (31%)

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