DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and LOC100489992

DIOPT Version :9

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:XP_002941889.1 Gene:LOC100489992 / 100489992 -ID:- Length:414 Species:Xenopus tropicalis


Alignment Length:387 Identity:110/387 - (28%)
Similarity:190/387 - (49%) Gaps:45/387 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 FIRPDPASLIYNTTALPADDEGSNYGYGSTTTLSGLQFETYNITVMMNFS---CDDYDLLSE--D 97
            |:||     :.:.:..|......|:.....|.|:  :|:..|.| ..||:   ..:::..:|  .
 Frog     5 FLRP-----LQDISGFPKTWRELNFNSSFGTLLA--KFQIMNRT-SFNFTDSRIGEWERFAELAK 61

  Fly    98 MWSSAY---FKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCV 159
            ..|.|.   .:.::.:.|..|.:.:|.||..||::|....||.:.|:.||.:||:.||:::....
 Frog    62 YESDAQKPTVQALLIVAYSVIIVMSLFGNMLVCHVVMKNKRMHSATSLFIVNLAVSDIMITLLNT 126

  Fly   160 PSSFISLFILNYWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATFI 224
            |.:.:. |:.:.|.||..:||...:.|..|:.||..||.||::||:..|:.|||||::.......
 Frog   127 PFTLVR-FVNSTWVFGKEMCHISRFVQYCSLHVSTLTLTAIALDRHQVILNPLKPRMSLSKGVLC 190

  Fly   225 IAGVWFIALATALPIPIVSGLDIPMSPWHTKCEKY---------ICREMWPSRTQEY--YYTLSL 278
            |:.:|.:|...:||..|           :.|..:|         :|...:|..:..:  |..||.
 Frog   191 ISFIWVMATCFSLPHAI-----------YQKLFRYNYRENKVRSLCIPDFPEPSDLFWKYLDLST 244

  Fly   279 FALQFVVPLGVLIFTYARITIRVWAKRPPGEAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPF 343
            |.|.:::||.::...|:|:..::|.:...|:..|.:.....::|:|.:||::.||:||..||.|.
 Frog   245 FLLLYLLPLLIITIAYSRLAKKLWMRNAIGDITTEQYITHRKNKKKSIKMLVLVVVVFAVCWFPL 309

  Fly   344 NILQLLLNDEEFAHWDPLPYVWFAFHWLAMSHCCYNPIIYCYMNARFR---SGFVQLMHRMP 402
            |...:|::.......:.|   :||.||.|||..||||.|||::|..||   ...:.:..|:|
 Frog   310 NCYVVLISSLGIKTKNAL---YFALHWFAMSSTCYNPFIYCWLNESFRLELKSLLSMCQRIP 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tm_4 113..>234 CDD:304433 42/120 (35%)
7tm_1 122..383 CDD:278431 84/271 (31%)
LOC100489992XP_002941889.1 7tmA_GPR83 73..357 CDD:320511 93/298 (31%)
TM helix 1 74..100 CDD:320511 8/25 (32%)
TM helix 2 107..132 CDD:320511 8/24 (33%)
TM helix 3 145..175 CDD:320511 12/29 (41%)
TM helix 4 186..207 CDD:320511 5/20 (25%)
TM helix 5 237..266 CDD:320511 9/28 (32%)
TM helix 6 286..316 CDD:320511 12/29 (41%)
TM helix 7 325..350 CDD:320511 15/27 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314830at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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