DRSC/TRiP Functional Genomics Resources

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Protein Alignment RYa-R and LOC100333270

DIOPT Version :9

Sequence 1:NP_001287552.1 Gene:RYa-R / 43253 FlyBaseID:FBgn0004842 Length:518 Species:Drosophila melanogaster
Sequence 2:XP_002666594.1 Gene:LOC100333270 / 100333270 -ID:- Length:393 Species:Danio rerio


Alignment Length:374 Identity:112/374 - (29%)
Similarity:192/374 - (51%) Gaps:46/374 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 MWSSAYFKIIVYMLYIPIFIFALIGNGTVCYIVYSTPRMRTVTNYFIASLAIGDILMSFFCVPS- 161
            :||.|:..::         :.|:.||..|.:|:.:..|||||||||:.:||:.|:     ||.: 
Zfish    25 LWSVAFALVL---------LVAVTGNLIVIWIIVAHKRMRTVTNYFLLNLAVSDV-----CVAAL 75

  Fly   162 SFISLFIL---NYWPFGLALCHFVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATF 223
            :.:..|:.   .:|.|..|.|.|.|:....:|..|.|::.||::|||:||:.|:|||::.:....
Zfish    76 NALVNFVYGAHGHWYFSSAYCRFQNFYPVAAVFASIYSMSAIALDRYMAIIHPMKPRLSAKVTKA 140

  Fly   224 IIAGVWFIALATALPIPIVSGLDIPMSPWHTKCEKYICREMWPSRTQE-YYYTLSLFALQFVVPL 287
            :|..||.:|...:.|:...|..::  .|..|.|  |:.   ||.:..: :.|.:.:..|.:::||
Zfish   141 VIVCVWILAAFLSFPLCFYSVTEV--LPHRTVC--YVA---WPRKDDDAFIYHVVVALLVYLLPL 198

  Fly   288 GVLIFTYARITIRVWAKRPPGEAETNRDQRMARSKRKMVKMMLTVVIVFTCCWLPFNILQLLLN- 351
            .::..||:|:.:.:|....||.:..|....: ::|||:||||:.||:.|..||||:::..::.: 
Zfish   199 ALMAVTYSRVGLTLWGGDFPGHSSENLLDHL-QAKRKVVKMMVIVVVTFAICWLPYHVYFIVTSF 262

  Fly   352 DEEFAHWDPLPYVWFAFHWLAMSHCCYNPIIYCYMNARFRSGFVQLMHRMPGLRRWC-------C 409
            :.....:..:..|:.:..||:||...|||||||.:|:|||:||.::.       |||       |
Zfish   263 NRALRRFKWIQQVYLSVLWLSMSSSMYNPIIYCCLNSRFRAGFKRVF-------RWCPFIQMSNC 320

  Fly   410 ----LRSVGDRMNATSGEMTTKYHRHVGDALFRKPKICIRNGSSTSSQS 454
                |::...:....|...|.......|.|...:.|....:..|..|||
Zfish   321 DELELQTARFQQQRQSSVFTVTRMESDGSAAVSRRKSSSTSRCSVRSQS 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RYa-RNP_001287552.1 7tm_4 113..>234 CDD:304433 44/124 (35%)
7tm_1 122..383 CDD:278431 85/266 (32%)
LOC100333270XP_002666594.1 7tm_4 30..>167 CDD:304433 46/152 (30%)
7tm_1 40..294 CDD:278431 85/266 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D314830at33208
OrthoFinder 1 1.000 - - FOG0000620
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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