DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5521 and Garnl3

DIOPT Version :9

Sequence 1:NP_001163748.1 Gene:CG5521 / 43242 FlyBaseID:FBgn0039466 Length:1964 Species:Drosophila melanogaster
Sequence 2:NP_001342129.1 Gene:Garnl3 / 99326 MGIID:2139309 Length:1078 Species:Mus musculus


Alignment Length:387 Identity:97/387 - (25%)
Similarity:156/387 - (40%) Gaps:59/387 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1608 LQRSEKLMRELRNVDLQK----CRE-----THKMAVIYVAAGQEDKGSILRNTSGSSTYEMFVSA 1663
            |.:.||..||:.:.::||    ..|     ..|..|::...||.....:..|..||..::.|::.
Mouse   235 LDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEAFQKFLNL 299

  Fly  1664 LGWEIDLETHNGFLGGLPRQG--CGATAPYYATPFLEVVYHVATRMP-SDSSEAMLLKTRHLGND 1725
            ||..|.|:...|:.|||..:.  .|..:.|......||::||:|.:| |..:...:.:.||:|||
Mouse   300 LGDTITLKGWTGYRGGLDTKNNTTGINSVYTVYQGHEVMFHVSTMLPYSKENRQQVERKRHIGND 364

  Fly  1726 EVHIVWSEHNRD---YRRDILPTEFCDVLIVV-YPLRNGLFRVTVNRKPEVPWFGP-------LA 1779
            .|.||:.|....   ::..::.:.|..:..:| |..:|..:|:.:..:..||.|||       ..
Mouse   365 IVTIVFQEGEESSPAFKPSMIRSHFTHIFALVRYDQQNDNYRLKIFSEESVPLFGPPLPSPPVFT 429

  Fly  1780 NESVVSGACLATLIRATAINASRTKRAALPLYQQFYEERNRSLDS-VSSRYKESTTFEDFASRIY 1843
            :........|..||..        ::|.|.. ..|.::|.|:||. :.|.|::  ...|....:.
Mouse   430 DHQEFRDFLLVKLING--------EKATLET-PTFAQKRRRTLDMLIRSLYQD--LMPDLHKNML 483

  Fly  1844 NPMPLSTLGTLRESNASSSAAPLASALLDHNRASVKGWVQASIDSGPIMGIAPSASAGSTAAMEA 1908
            |....|.:  |.||..|:.....|      .:|......||......:.|.|||:.        |
Mouse   484 NRRSFSDV--LPESPKSARKKEEA------RQAEFVRIGQALKLKSIVRGDAPSSL--------A 532

  Fly  1909 ATGMSSASPRGPRKL--GAPFKSVTKKHSLQHIAVGGGAGA--GGDTPPESP----TLPQRR 1962
            |:||....|..|:..  ..|.::|......|.:.|...||.  ..|..|..|    |||.::
Mouse   533 ASGMCKKEPWEPQCFCCNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQ 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5521NP_001163748.1 Rap_GAP 1648..1820 CDD:280332 47/185 (25%)
Garnl3NP_001342129.1 Rap_GAP 284..462 CDD:307998 47/186 (25%)
CNH 556..861 CDD:307087 11/39 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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