DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5521 and garnl3

DIOPT Version :9

Sequence 1:NP_001163748.1 Gene:CG5521 / 43242 FlyBaseID:FBgn0039466 Length:1964 Species:Drosophila melanogaster
Sequence 2:XP_009299790.1 Gene:garnl3 / 560594 ZFINID:ZDB-GENE-060526-61 Length:1050 Species:Danio rerio


Alignment Length:366 Identity:90/366 - (24%)
Similarity:141/366 - (38%) Gaps:76/366 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1608 LQRSEKLMRELRNVDLQK----CRE-----THKMAVIYVAAGQEDKGSILRNTSGSSTYEMFVSA 1663
            :.|.||..||:.|.::||    ..|     ..|..|:|...||.....:..|..||.|:|.|::.
Zfish   181 VDRFEKGPREILNPEIQKDLLVLEEQEGSVNFKFGVLYAKDGQLTDDEMFSNEMGSETFEKFLNL 245

  Fly  1664 LGWEIDLETHNGFLGGLPRQG--CGATAPYYATPFLEVVYHVATRMP-SDSSEAMLLKTRHLGND 1725
            ||..|.|:...|:.|||..:.  .|..:.|......|:::||:|.:| |..::..:.:.||:|||
Zfish   246 LGDTICLQGWAGYRGGLDTKNDTTGINSIYTVYQGHELMFHVSTMLPYSKENKQQVERKRHIGND 310

  Fly  1726 EVHIVWSE---HNRDYRRDILPTEFCDVLIVV-YPLRNGLFRVTVNRKPEVPWFGP-------LA 1779
            .|.||:.|   .:..::..::.:.|..:..:| |..:|..:|:.:..:..||.|||       ..
Zfish   311 IVTIVFQEGDDASPSFKPSMIRSHFTHIFALVRYNSQNDSYRLKIFSEESVPLFGPPLPSPPVFT 375

  Fly  1780 NESVVSGACLATLIRA------TAINASRTKRAALPLYQQFYEE----------------RNRSL 1822
            :........|..||..      |...|.:.:|....|.:..|::                ..||.
Zfish   376 DHQEFRDFLLVKLINGEKATLETPTFAQKRQRTLDMLIRSLYQDLMPDMHKVPFSPQNMLNRRSF 440

  Fly  1823 DSV------SSRYKESTTFEDFAS-----------RIYNPMPLSTLGTLR----ESNASSSAAPL 1866
            ..|      |:|.||.....:|..           |...|..|.|.|..|    ||.:..|:.|.
Zfish   441 SDVLPESPKSARKKEEARQAEFVRVGQALKLKTIVRGDAPTSLVTTGLCRKEPWESQSFCSSFPY 505

  Fly  1867 ASALLDHNRASVKGWVQA---SIDSGPIMGIAPSASAGSTA 1904
            .....|       .|.|:   :.||..:|.:..|....|.|
Zfish   506 DIVCGD-------SWGQSLLVATDSAGVMLLEASDPLFSNA 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5521NP_001163748.1 Rap_GAP 1648..1820 CDD:280332 49/207 (24%)
garnl3XP_009299790.1 Rap_GAP 230..408 CDD:280332 46/177 (26%)
CNH 508..824 CDD:279162 9/39 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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