DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp97E and Tspan13

DIOPT Version :10

Sequence 1:NP_524524.1 Gene:Tsp97E / 43241 FlyBaseID:FBgn0039465 Length:228 Species:Drosophila melanogaster
Sequence 2:NP_001013262.1 Gene:Tspan13 / 366602 RGDID:1311788 Length:204 Species:Rattus norvegicus


Alignment Length:213 Identity:94/213 - (44%)
Similarity:135/213 - (63%) Gaps:18/213 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MCGGFTCSKNALIALNILYVMIGFLLIGVGVYARAASIVTNLPIVGGILACGVILICISMLGLAG 65
            :||||:||||.|.|||:||.::..||||:..:.....::::|.:||.::|.|:.|..|:::||.|
  Rat     2 VCGGFSCSKNCLCALNLLYTLVSLLLIGIAAWGIGFGLISSLRVVGVVIAVGIFLFLIALVGLIG 66

  Fly    66 AVKHHQVMLFFYMIILFMLFLIQFSIASSCLAVNSEQQQQFAEQGWMTVPTDLRKQVQDSLKCCG 130
            |||||||:||||||||.::|::|||::.:|||:|.|||.|..|.||... ...|..:|.:|.|||
  Rat    67 AVKHHQVLLFFYMIILLLVFIVQFSVSCACLALNREQQGQLLEVGWNNT-ASARNDIQRNLNCCG 130

  Fly   131 FNATAPSTTSVVPPSNEPSCELINQQCCAHSSEPDCRCEPCGPLLEDKIDYAFKLCGGLGIFFSF 195
            |....|:.|  .|.|            ||.|::   :|..|.|::.:......:..||:|:||||
  Rat   131 FRNYNPNDT--CPAS------------CAKSNQ---KCSSCAPIIGEYAGEVLRFVGGIGLFFSF 178

  Fly   196 TEVLAVFLARRYRNQHDP 213
            ||:|.|:|..|||||.||
  Rat   179 TEILGVWLTYRYRNQKDP 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp97ENP_524524.1 Tetraspanin 8..>130 CDD:459767 57/121 (47%)
Tspan13NP_001013262.1 Tetraspanin <55..190 CDD:459767 64/152 (42%)

Return to query results.
Submit another query.