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Protein Alignment CG6330 and Upp1

DIOPT Version :9

Sequence 1:	NP_733175.1	Gene:	CG6330 / 43240	FlyBaseID:	FBgn0039464	Length:	368	Species:	Drosophila melanogaster
Sequence 2:	NP_001152873.1	Gene:	Upp1 / 22271	MGIID:	1097668	Length:	311	Species:	Mus musculus

Alignment Length:	295	Identity:	143/295 - (48%)
Similarity:	201/295 - (68%)	Gaps:	1/295 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    41 YSDGTVKLRNSNIELMDQDILYHLALGSESHDLQEMFGDVKFVCMGGTPKRMENFAHFIMNEIGY 105
            ::|..::|.|.||..|.:|:|||..|.:.:||...|||||||||:||:..||..|..::..|:|.
Mouse    15 HNDCFIQLSNPNIAAMKEDVLYHFNLSTSTHDFPAMFGDVKFVCVGGSSSRMNTFIKYVAAELGL 79

  Fly   106 KLPAGTQLQDISAYSYRYSMYKVGPVLCVSHGMGTPSVSILMHEMIKLMYHAKCKDPVFIRIGTC 170
            ..| |.:..:|.|.:.||:|||.||||.||||||.||:.|::||:||::|||:|.:...|||||.
Mouse    80 DHP-GKEYPNICAGTDRYAMYKAGPVLSVSHGMGIPSIGIMLHELIKMLYHARCSNITIIRIGTS 143

  Fly   171 GGIGVDGGTVIITEDALDGQLRNSHEFTILGKTIHRPAKLDKKLARELKSLASPDDPYDTIIGKT 235
            ||||::.|:|:||:.|::...:...|..:|||.:.|...||.:|.:||...:|..:.:..::|.|
Mouse   144 GGIGLEPGSVVITQQAVNECFKPEFEQIVLGKRVIRNTNLDAQLVQELVQCSSDLNEFPMVVGNT 208

  Fly   236 LCTNDFYEGQGRLDGAFCDFSENEKMAYLEKLRENGVVNIEMESTIFAALTHHAGIKAAVVCVAL 300
            :||.||||||||||||.|.::|.:|.:||......||.||||||::||.:....|:|||||||.|
Mouse   209 MCTLDFYEGQGRLDGALCSYTEKDKQSYLRAAHAAGVRNIEMESSVFATMCSACGLKAAVVCVTL 273

  Fly   301 LNRLNGDQVNAPKEVMNEWQARPQILVSRYIRKVL 335
            |:||.|||:|.|.:|:.|:|.|||.||..:|:|.|
Mouse   274 LDRLQGDQINTPHDVLVEYQQRPQRLVGHFIKKSL 308

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.