DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spag1 and stub1

DIOPT Version :10

Sequence 1:NP_651514.1 Gene:Spag1 / 43239 FlyBaseID:FBgn0039463 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_955968.2 Gene:stub1 / 324243 ZFINID:ZDB-GENE-030131-2963 Length:287 Species:Danio rerio


Alignment Length:281 Identity:66/281 - (23%)
Similarity:124/281 - (44%) Gaps:43/281 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 KNLSQLEKEQFAERHRLRGNESFKAKEYENAIEEYNCSIIYDPENAVHAYNNRAVAHLKLKKYFS 282
            |..|..||...|:..:.:||..|.:::|:.|:..|:.:|..:|..||: |.|||:.::||::|..
Zfish     3 KMASSPEKSSSAQELKEQGNRLFLSRKYQEAVTCYSKAINRNPSVAVY-YTNRALCYVKLQQYDK 66

  Fly   283 AISDCQACLQIDPMNIKAH-------LRMAEAHNAEGKHLESLNVYK-KLLDFEPD----NAIAK 335
            |::||:..|::|..::|||       |.:.....|.|....:.|:.| :.|:|..|    ..|||
Zfish    67 ALADCKHALELDSQSVKAHFFLGQCQLELENYEEAIGNLQRAYNLAKEQRLNFGDDIPSALRIAK 131

  Fly   336 K-----AVEKLTSMLGEVAPSSATRLIIE---EIDPPQLKTSEP-------KKEAEKSEPTVVKK 385
            |     ..||..|...|:....:..::.|   |:| .::|.|:.       .|...|.:..::..
Zfish   132 KKRWNSIEEKRISQENELHAYLSKLILAEKERELD-DRVKQSDDSQNGGDISKMKSKHDKYLMDM 195

  Fly   386 PE---PVVSAKKPPPIKDYDLAEL---------VKPNRMV--KSNLVSAAEALGNKMQASKGGAP 436
            .|   .|...:|...|.||...::         :.|:.:.  :.::....:.:|:....::....
Zfish   196 DELFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 260

  Fly   437 KKPQSPPMTPKETLLRLPQDN 457
            :....|.:..||.:....|:|
Zfish   261 QDQLIPNLAMKEVIDAFIQEN 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spag1NP_651514.1 NlpI <229..373 CDD:443815 47/170 (28%)
TPR repeat 229..257 CDD:276809 7/27 (26%)
TPR repeat 262..293 CDD:276809 13/30 (43%)
TPR repeat 298..326 CDD:276809 8/35 (23%)
stub1NP_955968.2 NlpI <14..133 CDD:443815 37/119 (31%)
TPR repeat 14..42 CDD:276809 7/27 (26%)
TPR repeat 47..77 CDD:276809 13/30 (43%)
TPR repeat 82..109 CDD:276809 6/26 (23%)
CHIP_TPR_N 130..209 CDD:436460 17/79 (22%)
RING-Ubox_CHIP 211..281 CDD:438316 9/69 (13%)

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