DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spag1 and Rpap3

DIOPT Version :10

Sequence 1:NP_651514.1 Gene:Spag1 / 43239 FlyBaseID:FBgn0039463 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_017450271.1 Gene:Rpap3 / 300189 RGDID:1303036 Length:673 Species:Rattus norvegicus


Alignment Length:335 Identity:100/335 - (29%)
Similarity:150/335 - (44%) Gaps:42/335 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 EGHYPDLQRCAEEKLKALKPDSKLFRYEEQIKQSTDLDKTELKPILDWTDAIKTKDNALNELKKV 110
            ||....||...    .|:...||....:.|:|.:.:..:..::.:..|...::.||..|.....|
  Rat     2 EGELSPLQHLT----GAMTSTSKAVELQLQVKHNAEELQDFMRDLEHWEKTMRQKDLELRRQSGV 62

  Fly   111 KQNLNLPSVRKLSKIDLEKESKTEKPKPAPKATSPSNTKNKEARIKSTDYRKWDKYDPDEEILRM 175
            .:. |||.:|..|    .::.|..|.|.:.|.|...||||   ||||.||..|.|.|.|      
  Rat    63 PEE-NLPPIRNGS----FRKKKKRKTKDSSKKTKEENTKN---RIKSFDYDAWAKLDVD------ 113

  Fly   176 DLNEERDQEQREKIISNHSKSVTTDKLQSERDSLYERLQAQLKNLSQLEKEQFAERHRLRGNESF 240
            .:.:|.|:|.     |.|. ||:.:. :|:.|.:  |:.:| |.|...||          ||:.|
  Rat   114 SILDELDKED-----STHD-SVSQES-ESDEDGV--RVDSQ-KALVLKEK----------GNKYF 158

  Fly   241 KAKEYENAIEEYNCSIIYDPENAVHAYNNRAVAHLKLKKYFSAISDCQACLQIDPMNIKAHLRMA 305
            |..:|:.|||.|...:..||.|.| ...|||.|:.:|||:..|.|||...:.:.....||:.|..
  Rat   159 KQGKYDEAIECYTKGMDADPYNPV-LPTNRASAYFRLKKFAVAESDCNLAIALSRSYTKAYARRG 222

  Fly   306 EAHNAEGKHLESLNVYKKLLDFEPDNAIAKKAVEKLTSMLGEVAPSSATRLIIEEIDPP--QLKT 368
            .|..|..|..::...|.|:|:.||||..|...:.|:...|.. ..:|..:.|...|.|.  :.|.
  Rat   223 AARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTS-KENSHPKDIAAVIKPAEGERKA 286

  Fly   369 SEPKKEAEKS 378
            :|.::..:|:
  Rat   287 NEDQRGRQKA 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spag1NP_651514.1 NlpI <229..373 CDD:443815 46/145 (32%)
TPR repeat 229..257 CDD:276809 9/27 (33%)
TPR repeat 262..293 CDD:276809 13/30 (43%)
TPR repeat 298..326 CDD:276809 8/27 (30%)
Rpap3XP_017450271.1 TPR 140..>366 CDD:440225 53/172 (31%)
TPR repeat 147..175 CDD:276809 12/37 (32%)
TPR repeat 180..210 CDD:276809 13/30 (43%)
TPR repeat 215..243 CDD:276809 8/27 (30%)
Spy 286..>419 CDD:443119 2/11 (18%)
TPR repeat 296..324 CDD:276809 0/1 (0%)
TPR repeat 329..359 CDD:276809
TPR repeat 364..391 CDD:276809
RPAP3_C 553..643 CDD:464012
Blue background indicates that the domain is not in the aligned region.

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