DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spag1 and Ttc16

DIOPT Version :9

Sequence 1:NP_651514.1 Gene:Spag1 / 43239 FlyBaseID:FBgn0039463 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_038962027.1 Gene:Ttc16 / 100362059 RGDID:2318922 Length:1178 Species:Rattus norvegicus


Alignment Length:363 Identity:80/363 - (22%)
Similarity:135/363 - (37%) Gaps:93/363 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 DPDEEILRMDLNEERDQEQREKIISNHSKSVTTDKLQSERDSLYERLQAQLKNLSQLEKEQFAER 231
            ||:..:.|..|  .|..:|.:..:.:..|::  |.:...:|:|.::.|.||    .|....||..
  Rat   298 DPNFFLFRGTL--RRRLQQYDPAVEDFLKAL--DMMTESQDNLVKQAQRQL----LLTYNDFAVH 354

  Fly   232 HRLRGNESFKAKEYENAIEEYNCSIIYDPENAVHAYNNRAVAHLKLKKYFSAISDCQACLQIDPM 296
            ..|.|       .|:.::...| ..|.|.:|....|.||.....:|.....|.:|.:..|.:.|:
  Rat   355 CYLHG-------AYQESVLLLN-KAIRDEQNEKGLYINRGDCFYQLGNLAFAEADYKQALALSPL 411

  Fly   297 NIKAHLRM-------------------AEAHNAEG-KHLESLNVY-----------KKLLDFEPD 330
            :..|:|||                   ||.|.:|. :|......|           :.:|....|
  Rat   412 DEGANLRMGVLQEKMGFCQQKHRQFQTAEEHFSEAIRHNPQKPQYYLHRAKCRQFLQNILGARQD 476

  Fly   331 NAIA--------KKA-----------VE-KLTSMLGEVAPSSATRLIIEEIDP----PQ---LKT 368
            .|..        |.|           || .|.|.:.|:|....||:|  |..|    ||   |:.
  Rat   477 VATVLLLNPNYPKMAAMMNTLFPGMTVEGALKSRVAELARLQLTRMI--ENGPRRNYPQSIVLQR 539

  Fly   369 SEPKKEAE------KSEPTVVKKPEPVVSAKKPPPIKDYDLAELVKPNRMVKSNLV--SAAEALG 425
            ...:::|:      |.||..:.|.|.|...:.|...|...:.::.:....:..:.|  :::.::.
  Rat   540 LMERQKAQAMVRSWKKEPPEIPKEEEVTIFQAPEVAKGKKVRKIPRKRTSLTDSYVDQTSSGSVF 604

  Fly   426 NKMQASKGGAPKKPQS--------PPMTPKETLLRLPQ 455
            :.|..|..| |:...|        .|::..|::|..||
  Rat   605 SIMSISTSG-PEMSTSREYMSTSHTPISSSESILPKPQ 641

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spag1NP_651514.1 TPR_11 229..295 CDD:290150 15/65 (23%)
TPR repeat 229..257 CDD:276809 5/27 (19%)
TPR repeat 262..293 CDD:276809 8/30 (27%)
TPR_11 266..329 CDD:290150 19/93 (20%)
TPR 266..297 CDD:197478 8/30 (27%)
TPR repeat 298..326 CDD:276809 10/58 (17%)
Ttc16XP_038962027.1 PEP_TPR_lipo <156..>425 CDD:274350 35/142 (25%)
TPR repeat 183..213 CDD:276809
TPR repeat 218..245 CDD:276809
TPR repeat 299..327 CDD:276809 6/31 (19%)
3a0801s09 <305..>457 CDD:273380 38/167 (23%)
TPR repeat 347..373 CDD:276809 6/33 (18%)
TPR repeat 378..408 CDD:276809 7/29 (24%)
TPR repeat 413..448 CDD:276809 8/34 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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