DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and YHP1

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_010739.3 Gene:YHP1 / 852062 SGDID:S000002859 Length:353 Species:Saccharomyces cerevisiae


Alignment Length:274 Identity:64/274 - (23%)
Similarity:104/274 - (37%) Gaps:57/274 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 NTTILSVPQ----RPSSPRQFFERLYGHLETRSSENGEIDVGTHAHKPPPCDTPYHSDGGSVSSP 88
            ||.:.|:|.    ..:||.|.  ....:....|.:.|:|       :.||.....|     :..|
Yeast     5 NTVLPSLPNIITGTSNSPFQL--HTLPNTNFPSDDQGDI-------RLPPLAASAH-----IVRP 55

  Fly    89 DISI-----SDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHH-----------HHHPPQLVH 137
            .::|     .:||....:..|.||..........|..:.::...|           ...|||.:|
Yeast    56 VVNIYKSPCDEERPKRKSPQAVDFLSQRVTTSMTPLSKPKKLSSHSPFTPTVRVCSKEQPPQSMH 120

  Fly   138 --QKLSYVSPPPAIAAGGAANPVLPHAFPAGFPSDPHFSAGF--------SAFLARRRRKEGRQR 192
              :|::.::  |..||.....|.........|....|....|        :|.||||:|      
Yeast   121 SYKKVNILT--PLSAAKAVLTPTTRKEKKRSFAFITHSQETFPKKEPKIDNARLARRKR------ 177

  Fly   193 RQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQH 257
              |.|.|.|..: |:..|......::::|.||:|...::|..::|||||:|...|:.:.:....|
Yeast   178 --RRTSSYELGI-LQTAFDECPTPNKAKRIELSEQCNMSEKSVQIWFQNKRQAAKKHKNSGNTSH 239

  Fly   258 YRNFVVANGFMSSI 271
            .:  |.:|..||.|
Yeast   240 CK--VHSNDSMSMI 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 16/50 (32%)
YHP1NP_010739.3 COG5576 123..278 CDD:227863 38/142 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I2937
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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