DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and Hhex

DIOPT Version :10

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_077361.1 Gene:Hhex / 79237 RGDID:619932 Length:271 Species:Rattus norvegicus


Alignment Length:223 Identity:63/223 - (28%)
Similarity:95/223 - (42%) Gaps:73/223 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 VGTHAHKPPPC-----DTPYHSD-----GGSVSSPDISISDERTS----LAAY--PAYDFYGHAK 112
            ||...:.|.|.     .||::.|     |.:..:|..::....:|    :::|  |.|:      
  Rat    14 VGVPLYAPTPLLQPAHPTPFYIDDILGRGPAAPTPTPTLPSPNSSFTSLVSSYRTPVYE------ 72

  Fly   113 DYPQHPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAIAA----GGAANPVLP---------HAF- 163
                 |:..|....||                |..|:||    ||...|:.|         ||. 
  Rat    73 -----PTPVHPAFSHH----------------PAAALAAAYGPGGFGGPLYPFPRTVNDYTHALL 116

  Fly   164 ---PAGFPSDPHFSAGFSAFLAR--RRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFE 223
               |.|.|      ..::.||.|  .:||.|:.|     ||.:||:.||.:|...:|:|...|..
  Rat   117 RHDPLGKP------LLWNPFLQRPLHKRKGGQVR-----FSNDQTIELEKKFETQKYLSPPERKR 170

  Fly   224 LAETLRLTETQIKIWFQNRRAKDKRIEK 251
            ||:.|:|:|.|:|.||||||||.:|:::
  Rat   171 LAKMLQLSERQVKTWFQNRRAKWRRLKQ 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeodomain 196..248 CDD:459649 25/51 (49%)
HhexNP_077361.1 Homeodomain 137..195 CDD:459649 29/62 (47%)

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