DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and hoxd1

DIOPT Version :9

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_001016678.1 Gene:hoxd1 / 549432 XenbaseID:XB-GENE-482731 Length:301 Species:Xenopus tropicalis


Alignment Length:342 Identity:84/342 - (24%)
Similarity:122/342 - (35%) Gaps:111/342 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SPGIKRSDSLDPIANTTILSVP----QRPSSPRQFFERLYGHLETRSSENG-------EIDVGTH 67
            ||...|||.    .|.|:...|    ..|..|   ...:.|.:..::|...       .:||   
 Frog    17 SPKFCRSDQ----RNMTLQPYPGSGADHPFMP---VGGVPGSVAHQASHQSPALYAPCSLDV--- 71

  Fly    68 AHKPPPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHHHHHP 132
            |::|||             ..|.|.....|.      ||:||          ..|.......|.|
 Frog    72 AYEPPP-------------PSDYSFLHSSTD------YDYYG----------SNHLVEETGGHIP 107

  Fly   133 ----------PQLVHQKLSY--------------VSPPPAIAAGGAANPVLP----HAFPAGFPS 169
                      ..:::.:|||              ...|..:..||....:.|    :..||...|
 Frog   108 YGSSVFPGNGSYILNGQLSYRTLGEETQMAQIAQCKEPLEVYPGGNLQSISPSPGTYPKPASPAS 172

  Fly   170 DPHFSAGFSAFLARRRRKEGRQRRQ---------RTTFSTEQTLRLEVEFHRNEYISRSRRFELA 225
            |.|.|......:.|...|:..|...         ||.|:|:|...||.|||.|:|::|:||.|:|
 Frog   173 DTHVSTFDWMKVKRNPPKKSLQSEYGVASPPCTVRTNFTTKQLTELEKEFHFNKYLTRARRIEIA 237

  Fly   226 ETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAV 290
            .:|:|.:||:||||||||.|.|:.|:             .|.:.:        .||.|....:.|
 Frog   238 NSLQLNDTQVKIWFQNRRMKQKKRER-------------EGSLPN--------SPPSGPASSICV 281

  Fly   291 GVGLN---YYAAAATPA 304
            ...|:   :..|..:|:
 Frog   282 KTPLSKSVHETATLSPS 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeobox 196..247 CDD:278475 29/50 (58%)
hoxd1NP_001016678.1 Antp-type hexapeptide. /evidence=ECO:0000255 178..183 0/4 (0%)
Homeobox 207..260 CDD:365835 30/52 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..301 12/65 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45946
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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