Protein Alignment ro and hoxa1

DIOPT Version :10

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_001008017.1
• Gene: hoxa1 / 493379
• XenbaseID: XB-GENE-480737
• Length: 323
• Species: Xenopus tropicalis
• Alignment Length: 282
• Identity: 76/282 - (26%)
• Similarity: 104/282 - (36%)
• Gaps: 84/282 - (29%)

  Fly    66 THAHKPPPCDTPYHSDGGSVSSPDISISDERTSLAAYPAYDFYGH-AKDYPQHPSQQHQQ----- 124
            ||.    .|.:.|.....|.......|:.|....|.:|...:.|: |....||  .|||.
 Frog    86 THT----SCGSNYGMQNFSPGYSHFPINQEADVSAGFPQSVYSGNIASSVVQH--HQHQSYIEGS 144

  Fly   125 -HHHHHHHPPQLVHQKLSYV------------------SPPPAIAAGGA---------ANPVLPH 161
             |:.||.:.|.   |.:|..                  ||....:.|.|         .||  |.
 Frog   145 AHYIHHSYGPD---QNISVANYNNNVSSLHISQREVCRSPSSETSPGPAQTFDWMKVKRNP--PK 204

  Fly   162 AFPAGFPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRRFELAE 226
            ...||       ..||:          |:....||.|:|:|...||.|||.|:|::|:||.|:|.
 Frog   205 TGKAG-------EYGFA----------GQPNTARTNFTTKQLTELEKEFHFNKYLTRARRVEIAA 252

  Fly   227 TLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVG 291
            .|:|.|||:||||||||.|.|:.||                      :....:.|...||.....
 Frog   253 ALQLNETQVKIWFQNRRMKQKKREK----------------------EGLLPISPSASTGSDEKS 295

  Fly   292 VGLNYYAAAATPAALPKDNTQD 313
            ..|:..:.::..|..|..:|.|
 Frog   296 EELSEKSNSSPCAPSPASSTSD 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeodomain	196..248	CDD:459649	30/51 (59%)
hoxa1	NP_001008017.1	Homeodomain	221..274	CDD:459649	31/52 (60%)