DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ro and repo

DIOPT Version :10

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:465 Identity:98/465 - (21%)
Similarity:139/465 - (29%) Gaps:207/465 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 PPCDT--PYHSDGGSVS-----SPD-ISISDERTSLAAYPAYDFYGHAKDYPQHPSQQHQQHHHH 128
            |.|:|  |....||:.|     ||: ::..|....:..|.....|.:.....:...||.||.|||
  Fly    59 PDCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQHHH 123

  Fly   129 HHH-------PPQ----LVHQ------------------------KLSYVSPP------------ 146
            .||       ||.    |:|:                        ||.|.|.|            
  Fly   124 QHHQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHL 188

  Fly   147 -----------------------PAIAAGGAANPVLP---------HAFPAGF--PSDPH----- 172
                                   |.:..||:|...|.         .|..||.  ||...     
  Fly   189 YGGSPHHLDHLDHGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTVVNG 253

  Fly   173 -----------------------FSAGFSAFLARR----RRKEG-----RQRRQRTTFSTEQTLR 205
                                   .:.|.:|..|::    .:|:|     ::::.||||:..|...
  Fly   254 TTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPNGIKKKKTRTTFTAYQLEE 318

  Fly   206 LEVEFHRNEYISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYR----------- 259
            ||..|.|..|.....|.|||..|.|:|:::::||||||||.::.|..:...:.:           
  Fly   319 LERAFERAPYPDVFAREELAIKLNLSESRVQVWFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNP 383

  Fly   260 -------------NFVVANGFMS---------------SIMGQAA-------------------- 276
                         ..|...|.|.               |::..||                    
  Fly   384 GTLAPPFTSYPQTTTVTPPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLF 448

  Fly   277 ----------TTMPPGGVTGGVA------VGVGLNYYAAAATPAALPKDNTQDANFIDIDDQFQR 325
                      |.|..|..||.||      |..|.:|..|....|  .:....|...:.:    ..
  Fly   449 PMRHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQTA--QQQQLADGTLVTV----HA 507

  Fly   326 QQQQKQQQQQ 335
            .|||:|||||
  Fly   508 HQQQQQQQQQ 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeodomain 196..248 CDD:459649 24/51 (47%)
repoNP_477026.1 Homeodomain 313..361 CDD:459649 21/47 (45%)

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