DRSC/TRiP Functional Genomics Resources

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Protein Alignment ro and MSX1

DIOPT Version :10

Sequence 1:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster
Sequence 2:NP_002439.2 Gene:MSX1 / 4487 HGNCID:7391 Length:303 Species:Homo sapiens


Alignment Length:227 Identity:73/227 - (32%)
Similarity:98/227 - (43%) Gaps:76/227 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 KLSYVSPPPAI-AAGGAANPVLPHAFPAG------FPSDP----HFSAG---------------- 176
            |.|.::|...: ||||:|.|:   ..|.|      .||.|    |||.|                
Human    76 KESALAPSEGVQAAGGSAQPL---GVPPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESP 137

  Fly   177 -------------FSAFLARR-------RRKEGRQRRQRTTFSTEQTLRLEVEFHRNEYISRSRR 221
                         ||...|||       .||....|:.||.|:|.|.|.||.:|.:.:|:|.:.|
Human   138 EKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAER 202

  Fly   222 FELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTM-PPG--- 282
            .|.:.:|.|||||:||||||||||.||:::|::::               :..||..| ||.   
Human   203 AEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEK---------------LKMAAKPMLPPAAFG 252

  Fly   283 -----GVTGGVAVGVGLNYYAAAA--TPAALP 307
                 |....||...|.:.|.|:.  ..||||
Human   253 LSFPLGGPAAVAAAAGASLYGASGPFQRAALP 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roNP_524521.1 Homeodomain 196..248 CDD:459649 28/51 (55%)
MSX1NP_002439.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..55
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..117 14/43 (33%)
PTZ00449 <105..>248 CDD:185628 50/157 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..174 7/40 (18%)
Homeodomain 173..229 CDD:459649 30/55 (55%)
Blue background indicates that the domain is not in the aligned region.

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