Protein Alignment ro and bcd

DIOPT Version :9

• Sequence 1: NP_524521.1
• Gene: ro / 43234
• FlyBaseID: FBgn0003267
• Length: 350
• Species: Drosophila melanogaster
• Sequence 2: NP_788587.1
• Gene: bcd / 40830
• FlyBaseID: FBgn0000166
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 322
• Identity: 85/322 - (26%)
• Similarity: 111/322 - (34%)
• Gaps: 119/322 - (36%)

  Fly   103 PAYDFYGHAKDYPQ-HPSQQHQQHHHHHHHPPQLVHQKLSYVSPPPAI---------AAGGAAN- 156
            |..:||.|...:.. ||......|.|.|.||    |.:...:..||..         ...||.|
  Fly     6 PDQNFYHHPLPHTHTHPHPHSHPHPHSHPHP----HHQHPQLQLPPQFRNPFDLLFDERTGAINY 66

  Fly   157 ----PVLPHAFPAG--FPSDPHFSAGFSAFLARRRRKEGRQRRQRTTFSTEQTLRLEVEFHRNEY 215
                |.||:..|..  |||:.     ....|..|     |.||.||||::.|...||..|.:..|
  Fly    67 NYIRPYLPNQMPKPDVFPSEE-----LPDSLVMR-----RPRRTRTTFTSSQIAELEQHFLQGRY 121

  Fly   216 ISRSRRFELAETLRLTETQIKIWFQNRRAKDKRIEKAQIDQH----YRNFVVANGFMSSIMGQAA 276
            ::..|..:|:..|.|...|:||||:|||    |..|.|.|||    |....::.|...|
  Fly   122 LTAPRLADLSAKLALGTAQVKIWFKNRR----RRHKIQSDQHKDQSYEGMPLSPGMKQS------ 176

  Fly   277 TTMPPGGVTGGVAVGVGLNYYAAAATPAAL---PKDNTQDANFIDIDDQ---------------- 322
            ...||...|  :::|.|       |||.||   |..:|..|:..:...:
  Fly   177 DGDPPSLQT--LSLGGG-------ATPNALTPSPTPSTPTAHMTEHYSESFNAYYNYNGGHNHAQ 232

  Fly   323 ---------------------------FQRQQ-------------------QQKQQQQQQQQ 338
                                       ||:||                   ||:|||.||||
  Fly   233 ANRHMHMQYPSGGGPGPGSTNVNGGQFFQQQQVHNHQQQLHHQGNHVPHQMQQQQQQAQQQQ 294

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ro	NP_524521.1	Homeobox	196..247	CDD:278475	20/50 (40%)
bcd	NP_788587.1	Homeobox	106..153	CDD:278475	18/50 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45469269
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	1	0.900	-	-		E2759_KOG0489
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	4	3.830